Jorge Manuel de Oliveira Fernandes
Professor
Fakultet for biovitenskap og akvakultur
Kompetanseområder
Epigenetics, Muscle growth, Innate immunity, Fish, Aquaculture
In a nutshell, I am using molecular and genomic tools to study muscle growth and the innate immune system in teleosts.
My main research interests are domestication, antimicrobial peptides, microRNAs and the epigenetic regulation of gene networks by environmental factors. I focus on commercially important species such as Nile tilapia, Atlantic cod, Atlantic halibut, Atlantic salmon and Senegalese sole but I also use zebrafish as a convenient model species.
You can find more information about my projects and publications at my personal page.
- I have been the coordinator of the MSc level course 'Aquatic Genomics and Bioinformatics' (BI311F) at Nord since 2008.
- In addition to mentoring 17 post-doctoral fellows and visiting research associates, I have been involved in supervision of 27 PhD theses (11 as main supervisor), 16 MSc theses (9 as main supervisor) and 10 BSc theses (main supervisor).
Selected Research Grants (Project Leader)
2021-2024. NORBRAQUA: Cooperation between Norway and Brazil in research and education for improved breeding in sustainable aquaculture. Research Council of Norway (2,666,000 NOK).
2016-2022. EPIFISH: Innovative epigenetic markers for fish domestication. ERC Consolidator Grant. European Research Council (1,996,000 EUR).
2008-2013. GROWCOD: Impact of photoperiod and sexual maturation on growth performance of Atlantic cod - a genomic perspective. TOPPFORSK. Research Council of Norway (7,700,000 NOK).
2024
Unravelling the temporal and spatial variation of fungal phylotypes from embryo to adult stages in Atlantic salmon 2024, Scientific Reports: Volum 14 Lokesh, Jep; Siriyappagouder, Prabhugouda; Fernandes, Jorge Manuel de Oliveira
One-carbon metabolism nutrients impact the interplay between DNA methylation and gene expression in liver, enhancing protein synthesis in Atlantic salmon 2024, Epigenetics: Volum 19 Saito, Takaya; Espe, Marit; Vikeså, Vibeke; Bock, Christoph; Thomsen, Tårn H.; Adam, Anne-Catrin
Lumpfish physiological response to chronic stress 2024, Frontiers in Marine Science: Volum 11 Lopes, Tiago; Costas, Benjamín; Ramos-Pinto, Lourenço; Reynolds, Patrick; Imsland, Albert; Aragao, Claudia
Sustainable Fish Meal-Free Diets for Gilthead Sea Bream (Sparus aurata): Integrated Biomarker Response to Assess the Effects on Growth Performance, Lipid Metabolism, Antioxidant Defense and Immunological Status 2024, Animals: Volum 14 Fernandes, Ana Margarida; Calduch-Giner, Josep Àlvar; Pereira, Gabriella V.; Gonçalves, Ana Teresa; Dias, Jorge; Johansen, Johan
Ocean warming shapes embryonic developmental prospects of the next generation in Atlantic cod 2024, ICES Journal of Marine Science: Volum 81 s. 733-747 Skjærven, Kaja Helvik; Alix, Maud; Kleppe, Lene; Fernandes, Jorge Manuel de Oliveira; Whatmore, Paul; Nedoluzhko, Artem
Embryonic temperature has long-term effects on muscle circRNA expression and somatic growth in Nile Tilapia 2024, Frontiers in Cell and Developmental Biology: Volum 12 Rbbani, Md Golam; Murshed, Riaz; Siriyappagouder, Prabhugouda; Sharko, Fedor; Nedoluzhko, Artem; Joshi, Rajesh
2023
Host habitat rather than evolutionary history explains gut microbiome diversity in sympatric stickleback species 2023, Frontiers in Microbiology: Volum 14 s. 1-12 Mattanavile Shankregowda, Aruna; Siriyappagouder, Prabhugouda; Kuizenga, Marijn; Bal, Mattheus Peter; Abdelhafiz, Yousri Abdelmutalab Ahmed; Eizaguirre, Christophe
Genome-wide hydroxymethylation profiles in liver of female Nile tilapia with distinct growth performance 2023, Scientific Data: Volum 10 s. 1-8 Konstantinidis, Ioannis; Sætrom, Pål; Fernandes, Jorge Manuel de Oliveira
The complete mitochondrial genome of the Atlantic spiny lumpsucker Eumicrotremus spinosus (Fabricius, 1776) 2023, Mitochondrial DNA Part B: Resources: Volum 8 s. 364-367 Pinninti, Likith Reddy; Maurstad, Marius Filomeno; Hoff, Siv Nam Khang; Kristensen, Torstein; Noble, Leslie Robert; Jentoft, Sissel
The novel circular RNA CircMef2c is positively associated with muscle growth in Nile tilapia 2023, Genomics: Volum 115 s. 1-14 Nedoluzhko, Artem; Siriyappagouder, Prabhugouda; Sharko, Fedor; Galindo-Villegas, Jorge; Raeymaekers, Joost A. M.; Joshi, Rajesh
Localization of Acetylcholine, Alpha 7-NAChR and the Antimicrobial Peptide Piscidin 1 in the Macrophages of Fish Gut: Evidence for a Cholinergic System, Diverse Macrophage Populations and Polarization of Immune Responses 2023, Fishes: Volum 8 Zaccone, Giacomo; Alesci, Alessio; Mokhtar, Doaa; Aragona, Marialuisa; Guerrera, Maria; Capillo, Gioele
Potential of algae-derived alginate oligosaccharides and β-glucan to counter inflammation in adult zebrafish intestine 2023, Frontiers in Immunology: Volum 14 s. 1-16 Rehman, Saima; Gora, Adnan Hussain; Abdelhafiz, Yousri Abdelmutalab Ahmed; Dias, Jorge; Pierre, Ronan; Meynen, Koen
Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model 2023, Frontiers in Nutrition: Volum 10 s. 1-18 Gora, Adnan Hussain; Rehman, Saima; Dias, Jorge; Fernandes, Jorge Manuel de Oliveira; Olsvik, Pål Asgeir; Sørensen, Mette
Microbial oil, alone or paired with β-glucans, can control hypercholesterolemia in a zebrafish model 2023, Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids: Volum 1868 s. 1-17 Gora, Adnan Hussain; Rehman, Saima; Dias, Jorge; Fernandes, Jorge Manuel de Oliveira; Olsvik, Pål Asgeir; Sørensen, Mette
Fish as the lesser-known counterpart to mammalian models to explore the biofunctionality of polyphenols 2023, Journal of Functional Foods: Volum 107 s. 1-14 Abdelhafiz, Yousri Abdelmutalab Ahmed; Gora, Adnan Hussain; Rehman, Saima; Chowdhury, Soumitra; Park, Youngjin; Saraswathy, Bisa
DNA hydroxymethylation differences underlie phenotypic divergence of somatic growth in Nile tilapia reared in common garden 2023, Epigenetics: Volum 18 Konstantinidis, Ioannis; Sætrom, Pål; Brieuc, Marine Servane Ono; Jakobsen, Kjetill Sigurd; Liedtke, Hannes; Pohlmann, Caroline
Exploring the Effects of Acute Stress Exposure on Lumpfish Plasma and Liver Biomarkers 2023, Animals: Volum 13 s. 1-14 da Santa Lopes, Tiago; Costas, Benjamín; Ramos-Pinto, Lourenço; Reynolds, Patrick; Imsland, Albert K. D.; Fernandes, Jorge M. O.
CircPrime: a web-based platform for design of specific circular RNA primers 2023, BMC Bioinformatics: Volum 24 Sharko, Fedor; Rbbani, Md Golam; Siriyappagouder, Prabhugouda; Raeymaekers, Joost A. M.; Galindo-Villegas, Jorge; Fernandes, Jorge Manuel de Oliveira
Shell formation in two species of bivalves: the role of mantle cells and haemocytes 2023, Zoological Journal of the Linnean Society: Alesci, Alessio; Albano, Marco; Fumia, Angelo; Messina, Emmanuele; Miller, Anthea; Fresco, Dario Di
2022
Non-coding RNAs in fish physiology and development: miRNAs as a cornerstone in gene networks Cellular and Molecular Approaches in Fish Biology 2022, Academic Press: s. 105-160 Solís, Francisco Javier Toledo; Fernandes, Jorge Manuel de Oliveira; Sarropoulou, Elena; Fernandez, Ignacio
Ancient DNA Reveals Maternal Philopatry of the Northeast Eurasian Brown Bear (Ursus arctos) Population during the Holocene 2022, Genes: Volum 13 Boulygina, Eugenia; Sharko, Fedor; Cheprasov, Maksim; Gladysheva-Azgari, Maria; Slobodova, Natalia; Tsygankova, Svetlana
Distribution of the Order Lampriformes in the Mediterranean Sea with Notes on Their Biology, Morphology, and Taxonomy 2022, Biology (Basel): Volum 11 Albano, Marco; D’Iglio, Claudio; Spanò, Nunziacarla; Fernandes, Jorge Manuel de Oliveira; Savoca, Serena; Capillo, Gioele
Developmental defects and behavioral changes in a diet-induced inflammation model of zebrafish 2022, Frontiers in Immunology: Volum 13 Rehman, Saima; Gora, Adnan Hussain; Varshney, Shubham; Dias, Jorge; Olsvik, Pål Asgeir; Fernandes, Jorge Manuel de Oliveira
Noncoding RNAs in fish physiology and development: miRNAs as a cornerstone in gene networks Cellular and Molecular Approaches in Fish Biology 2022, Academic Press: s. 105-159 Toledo-Solís, Francisco Javier; Fernandes, Jorge Manuel de Oliveira; Sarropoulou, Elena; Monzón, Ignacio Fernandez
Cellular and Molecular Approaches in Fish Biology 2022, Academic Press: Fernandez, Ignacio; Fernandes, Jorge Manuel de Oliveira
Expression of the Antimicrobial Peptide Piscidin 1 and Neuropeptides in Fish Gill and Skin: A Potential Participation in Neuro-Immune Interaction 2022, Marine Drugs: Volum 20 Zaccone, Giacomo; Capillo, Gioele; Fernandes, Jorge Manuel de Oliveira; Kiron , Viswanath; Lauriano, Eugenia Rita; Alesci, Alessio
Immunohistochemical and ultrastructural study of the immune cell system and epithelial surfaces of the respiratory organs in the bimodally breathing African sharptooth catfish (Clarias gariepinus Burchell, 1822) 2022, The Anatomical Record: Advances in Integrative Anatomy and Evolutionary Biology: Volum 305 s. 3212-3229 Maina, John Ndegwa; Icardo, Jose Manuel; Zaccone, Giacomo; Aragona, Marialuisa; Lauriano, Eugenia Rita; Alesci, Alessio
Clues from the intestinal mucus proteome of Atlantic salmon to counter inflammation 2022, Journal of Proteomics: Volum 255 Kiron , Viswanath; Kathiresan, Purushothaman; Fernandes, Jorge Manuel de Oliveira; Sørensen, Mette; Vasanth, Ghana Kalerammana; Lin, Qingsong
Brewer’s Spent Dry Yeast Modulates Immunity in Gilthead Sea Bream (Sparus aurata) 2022, Frontiers in Marine Science: Volum 9 Konstantinidis, Ioannis; Firmino, Joana P.; Ruiz, Alberto; Iñarra, Bruno; Martin, David San; Estevez, Alicia
Genotyping-by-Sequencing Reveals the Impact of Restocking on Wild Common Carp Populations of the Southern Caspian Basin 2022, Frontiers in Ecology and Evolution: Volum 10 Jafari, Omid; Zeinalabedini, Mehrshad; Robledo, Diego; Fernandes, Jorge Manuel de Oliveira; Hedayati, Ali-Akbar; Arefnezhad, Babak
Population genomics of introduced Nile tilapia Oreochromis niloticus (Linnaeus, 1758) in the Democratic Republic of the Congo: Repeated introductions since colonial times with multiple sources 2022, Molecular Ecology: Volum 31 s. 3304-3322 Geraerts, Mare; Vangestel, Carl; Artois, Tom; Fernandes, Jorge Manuel de Oliveira; Jorissen, Michiel; Manda, Auguste
Integration of Morphometrics and Machine Learning Enables Accurate Distinction between Wild and Farmed Common Carp 2022, Life: Volum 12 Jafari, Omid; Ebrahimi, Mansour; Hedayati, Ali-Akbar Hedayati; Zeinalabedini, Mehrshad; Poorbagher, Hadi; Nasrolahpourmoghadam, Maryam
Management of Hypercholesterolemia Through Dietary ß-glucans–Insights From a Zebrafish Model 2022, Frontiers in Nutrition: Volum 8 Gora, Adnan Hussain; Rehman, Saima; Kiron , Viswanath; Dias, Jorge; Fernandes, Jorge Manuel de Oliveira; Olsvik, Pål Asgeir
Early fish domestication affects methylation of key genes involved in the rapid onset of the farmed phenotype 2022, Epigenetics: Volum 17 s. 1281-1298 Podgorniak, Tomasz; Dhanasiri, Anusha; Chen, Xianquan; Ren, Xu; Kuan, Pei-Fen; Fernandes, Jorge Manuel de Oliveira
Intergenerational Transfer of Persistent Bacterial Communities in Female Nile Tilapia 2022, Frontiers in Microbiology: Volum 13 Abdelhafiz, Yousri Abdelmutalab Ahmed; Fernandes, Jorge Manuel de Oliveira; Donati, Claudio; Pindo, Massimo; Viswanath, Kiron
Micronutrient supplementation affects DNA methylation in male gonads with potential intergenerational epigenetic inheritance involving the embryonic development through glutamate receptor-associated genes 2022, BMC Genomics: Volum 23 Saito, Takaya; Whatmore, Paul; Taylor, John F.; Fernandes, Jorge Manuel de Oliveira; Adam, Anne-Catrin; Tocher, Douglas R.
2021
Breeding Strategy Shapes the Composition of Bacterial Communities in Female Nile Tilapia Reared in a Recirculating Aquaculture System 2021, Frontiers in Microbiology: Volum 12 s. 1-16 Abdelhafiz, Yousri Abdelmutalab Ahmed; Fernandes, Jorge Manuel de Oliveira; Larger, Simone; Albanese, Davide; Donati, Claudio; Jafari, Omid
Zebrafish intestinal transcriptome highlights subdued inflammatory responses to dietary soya bean and efficacy of yeast β-glucan 2021, Journal of Fish Diseases: Volum 44 s. 1619-1637 Rehman, Saima; Gora, Adnan Hussain; Siriyappagouder, Prabhugouda; Brugman, Sylvia; Fernandes, Jorge Manuel de Oliveira; Dias, Jorge
Digestive tract morphology and enzyme activities of juvenile diploid and triploid Atlantic salmon (Salmo salar) fed fishmealbased diets with or without fish protein hydrolysates 2021, PLOS ONE: Volum 16 Martinez-Llorens, Silvia; Peruzzi, Stefano; Falk-Petersen, Inger Britt; Godoy-Olmos, Sergio; Ulleberg, Lars Olav; Tomas-Vidal, Ana
Metabolic and molecular signatures of improved growth in Atlantic salmon (Salmo salar) fed surplus levels of methionine, folic acid, vitamin B6 and B12 throughout smoltification. 2021, British Journal of Nutrition: Volum 127 s. 1289-1302 Adam, Anne-Catrin; Saito, Takaya; Espe, Marit; Whatmore, Paul; Fernandes, Jorge Manuel de Oliveira; Vikeså, Vibeke
Function of Circular RNAs in Fish and Their Potential Application as Biomarkers 2021, International Journal of Molecular Sciences: Volum 22 s. 1-19 Rbbani, Md Golam; Nedoluzhko, Artem; Galindo-Villegas, Jorge; Fernandes, Jorge Manuel de Oliveira
Expression of acetylcholine, its contribution to regulation of immune function and O2 sensing and phylogenetic interpretations of the African butterfly fish Pantodon buchholzi (Osteoglossiformes, Pantodontidae) 2021, Fish and Shellfish Immunology: Volum 111 s. 189-200 Capillo, Gioele; Zaccone, Giacomo; Cupello, Camila; Fernandes, Jorge Manuel de Oliveira; Kiron , Viswanath; Kuciel, Michal
Epigenetic mapping of the somatotropic axis in Nile tilapia reveals differential DNA hydroxymethylation marks associated with growth 2021, Genomics: Volum 113 s. 2953-2964 Konstantinidis, Ioannis; Anastasiadi, Dafni; Sætrom, Pål; Nedoluzhko, Artem; Mjelle, Robin; Podgorniak, Tomasz
Genetic Investigation of Aral Wild Common Carp Populations (Cyprinus carpio) Using ddRAD Sequencing 2021, Diversity: Volum 13 Shalgimbayeva, Gulmira; Volkov, Alexander; Slobodova, Natalia; Sharko, Fedor S.; Tsygankova, Svetlana V.; Boulygina, Eugenia S.
The first mitochondrial 5-methylcytosine map in a non-model teleost (Oreochromis niloticus) reveals extensive strand-specific and non-CpG methylation 2021, Genomics: Volum 113 s. 3050-3057 Nedoluzhko, Artem; Mjelle, Robin; Renström, Maria; Skjærven, Kaja H.; Piferrer, Francesc; Fernandes, Jorge Manuel de Oliveira
Transcriptomic and cellular studies on the intestine of Atlantic salmon
Discovering intestinal macrophages using omic tools 2021, Nord universitet: Park, Youngjin; Viswanath, Kiron; Fernandes, Jorge Manuel de Oliveira
Structural Identification of the Pacemaker Cells and Expression of Hyperpolarization-Activated Cyclic Nucleotide-Gated (HCN) Channels in the Heart of the Wild Atlantic Cod, Gadus morhua (Linnaeus, 1758) 2021, International Journal of Molecular Sciences: Volum 22 Capillo, Gioele; Lauriano, Eugenia; Icardo, Jose; Siriyappagouder, Prabhugouda; Kuciel, Michal; Karapanagiotis, Stylianos
Neuroepithelial cells (NECs) and mucous cells express a variety of neurotransmitters and neurotransmitter receptors in the gill and respiratory air-sac of the catfish Heteropneustes fossilis (Siluriformes, Heteropneustidae): a possible role in local immune defence 2021, Zoology: Volum 148 Lauriano, E.R.; Capillo, Gioele; Icardo, Jose; Fernandes, Jorge Manuel de Oliveira; Kiron , Viswanath; Kuciel, Michal
Macrophage heterogeneity in the intestinal cells of salmon: Hints from transcriptomic and imaging data 2021, Frontiers in Immunology: Volum 12 s. 1-15 Park, Youngjin; Zhang, Qirui; Fernandes, Jorge Manuel de Oliveira; Wiegertjes, Geert; Kiron , Viswanath
Power Play of Commensal Bacteria in the Buccal Cavity of Female Nile Tilapia 2021, Frontiers in Microbiology: Volum 12 Abdelhafiz, Yousri Abdelmutalab Ahmed; Fernandes, Jorge Manuel de Oliveira; Stefani, Erika; Albanese, Davide; Donati, Claudio; Kiron , Viswanath
2020
Kisspeptin Influences the Reproductive Axis and Circulating Levels of microRNAs in Senegalese Sole 2020, International Journal of Molecular Sciences: Volum 21 Oliveira, Catarina; Fatsini, Elvira; Fernandez, Ignacio; Anjos, Catarina; Chauvigné, François; Cerdà, Joan
Nanoencapsulated Clove Oil Applied as an Anesthetic at Slaughtering Decreases Stress, Extends the Freshness and Lengthens Shelf Life of Cultured Fish 2020, Foods: Volum 9 s. 2-20 Lopez-Canovas, Amanda; Cabas, Isabel; Chaves-Pozo, Elena; Ros-Chumillas, Maria; Navarro-Segura, Laura; Lopez-Gomez, Antonio
Micronutrient supplementation affects transcriptional and epigenetic regulation of lipid metabolism in a dose-dependent manner 2020, Epigenetics: Saito, Takaya; Whatmore, Paul; Taylor, John F.; Fernandes, Jorge Manuel de Oliveira; Adam, Anne-Catrin; Tocher, Douglas R.
Adherent Intestinal Cells From Atlantic Salmon Show Phagocytic Ability and Express Macrophage-Specific Genes 2020, Frontiers in Cell and Developmental Biology: Volum 8 Park, Youngjin; Zhang, Qirui; Wiegertjes, Geert Frits; Fernandes, Jorge Manuel de Oliveira; Kiron , Viswanath
Intestinal Transcriptome Analysis Reveals Soy Derivative-Linked Changes in Atlantic Salmon 2020, Frontiers in Immunology: Volum 11 Kiron , Viswanath; Park, Youngjin; Siriyappagouder, Prabhugouda; Dahle, Dalia; Vasanth, Ghana Kalerammana; Dias, Jorge
DNA hydroxymethylation and improved growth of Nile tilapia (Oreochromis niloticus) during domestication 2020, Nord universitet: Fernandes, Jorge Manuel de Oliveira; Konstantinidis, Ioannis
Beneficial effects on growth, haematic indicators, immune status, antioxidant function and gut health in Juvenile Nile tilapia (Oreochromis niloticus ) by dietary administration of a multi‐strain probiotic 2020, Aquaculture Nutrition: Volum 26 s. 1369-1382 Chen, Xianquan; Zhang, Zhihao; Fernandes, Jorge Manuel de Oliveira; Gao, Yujie; Yin, Peng; Liu, Yongjian
Dietary inclusion of plant ingredients induces epigenetic changes in the intestine of zebrafish 2020, Epigenetics: s. 1035-1051 Dhanasiri, Anusha; Chen, Xianquan; Dahle, Dalia; Siriyappagouder, Prabhugouda; Fæste, Christiane Kruse; Fernandes, Jorge Manuel de Oliveira
Major gene expression changes and epigenetic remodelling in Nile tilapia muscle after just one generation of domestication 2020, Epigenetics: Volum 15 s. 1052-1067 Konstantinidis, Ioannis; Sætrom, Pål; Mjelle, Robin; Nedoluzhko, Artem; Robledo, Diego; Fernandes, Jorge Manuel de Oliveira
Pseudozyma priming influences expression of genes involved in metabolic pathways and immunity in zebrafish larvae 2020, Frontiers in Immunology: Volum 11 Siriyappagouder, Prabhugouda; Galindo-Villegas, Jorge; Dhanasiri, Anusha; Zhang, Qirui; Mulero, Victoriano; Kiron , Viswanath
A new strain group of common carp: The genetic differences and admixture events between Cyprinus carpio breeds 2020, Ecology and Evolution: Volum 10 s. 5431-5439 Nedoluzhko, Artem; Slobodova, Natalia; Sharko, Fedor S.; Shalgimbayeva, Gulmira; Tsygankova, Svetlana V.; Boulygina, Eugenia S.
CircParser: a novel streamlined pipeline for circular RNA structure and host gene prediction in non-model organisms 2020, PeerJ: Volum 8 Nedoluzhko, Artem; Sharko, Fedor S.; Rbbani, Md Golam; Teslyuk, Anton; Konstantinidis, Ioannis; Fernandes, Jorge Manuel de Oliveira
Shedding the light on litopenaeus vannamei differential muscle and hepatopancreas immune responses in white spot syndrome virus (WSSV) exposure 2020, Genes: Volum 11 Santos, Camilla A.; Andrade, Sónia C. S.; Fernandes, Jorge Manuel de Oliveira; Freitas, Patrícia
Plant-based diets induce transcriptomic changes in muscle of zebrafish and Atlantic salmon 2020, Frontiers in Genetics: Volum 11 Dhanasiri, Anusha; Amritha, Johny; Xue, Xi; Berge, Gerd Marit; Bogevik, André Sture; Rise, Matthew L.
Transcriptome sequencing and histology reveal dosage compensation in the liver of triploid pre-smolt Atlantic salmon 2020, Scientific Reports: Volum 10 Odei, Derrick Kwame; Hagen, Ørjan; Peruzzi, Stefano; Falk-Petersen, Inger-Britt; Fernandes, Jorge Manuel de Oliveira
2019
Circulating small non-coding RNAs provide new insights into vitamin K nutrition and reproductive physiology in teleost fish 2019, Biochimica et Biophysica Acta - General Subjects: Volum 1863 s. 39-51 Fernandez, Ignacio; Fernandes, Jorge Manuel de Oliveira; Roberto, Vânia P.; Kopp, Martina Elisabeth Luise; Oliveira, Catarina; Riesco, Marta
Lactobacillus dominate in the intestine of Atlantic salmon fed dietary probiotics 2019, Frontiers in Microbiology: Volum 9 Gupta, Shruti; Fečkaninová, Adriána; Jep, Lokesh; Koščová, Jana; Sørensen, Mette; Fernandes, Jorge Manuel de Oliveira
Paralogues From the Expanded Tlr11 Gene Family in Mudskipper (Boleophthalmus pectinirostris) Are Under Positive Selection and Respond Differently to LPS/Poly(I:C) Challenge 2019, Frontiers in Immunology: Volum 10 Qiu, Heng Tong; Fernandes, Jorge Manuel de Oliveira; Hong, Wan Shu; Wu, Hai Xu; Zhang, Yu Ting; Huang, Sheng
Differences in the fast muscle methylome provide insight into sex-specific epigenetic regulation of growth in Nile tilapia during early stages of domestication 2019, Epigenetics: Volum 14 s. 818-836 Podgorniak, Tomasz Krzysztof; Brockmann, Sven; Konstantinidis, Ioannis; Fernandes, Jorge Manuel de Oliveira
Development and validation of a liquid chromatography high-resolution mass spectrometry method for the simultaneous determination of mycotoxins and phytoestrogens in plant-based fish feed and exposed fish 2019, Toxins: Volum 11 Amritha, Johny; Fæste, Christiane Kruse; Bogevik, André Sture; Berge, Gerd Marit; Fernandes, Jorge Manuel de Oliveira; Ivanova, Lada
Macroalga-Derived Alginate Oligosaccharide Alters Intestinal Bacteria of Atlantic Salmon 2019, Frontiers in Microbiology: Volum 10 Gupta, Shruti; Jep, Lokesh; Abdelhafiz, Yousri Abdelmutalab Ahmed; Siriyappagouder, Prabhugouda; Pierre, Ronan; Sørensen, Mette
Diazinon negatively affects the integrity of environmental DNA stability: a case study with common carp (Cyprinus carpio) 2019, Environmental Monitoring & Assessment: Volum 191 s. 1-5 Pourmoghadam, Maryam Nasrolah; Poorbagher, Hadi; Fernandes, Jorge Manuel de Oliveira; Jafari, Omid
Microsatellite Analysis of Five Populations of Alosa braschnikowi (Borodin, 1904) Across the Southern Coast of the Caspian Sea 2019, Frontiers in Genetics: Volum 10 s. 1-8 Jafari, Omid; Fernandes, Jorge Manuel de Oliveira; Hedayati, Ali-Akbar; Shabany, Ali; Pourmoghadam, Maryam Nasrolah
Antibiotic-Induced Perturbations Are Manifested in the Dominant Intestinal Bacterial Phyla of Atlantic Salmon 2019, Microorganisms: Volum 7 Gupta, Shruti; Fernandes, Jorge Manuel de Oliveira; Kiron , Viswanath
Impact of nanoencapsulated clove-oil anesthesia in the physiological response and immune status of Nile tilapia 2019, Fish and Shellfish Immunology: Volum 91 s. 449 Lopez-Canovas, Amanda; Garcia-Ayala, Alfonsa; Lopez-Gomez, Antonio; Fernandes, Jorge Manuel de Oliveira; Galindo-Villegas, Jorge
2018
Low incubation temperature during early development negatively affects survival and related innate immune processes in zebrafish larvae exposed to lipopolysaccharide 2018, Scientific Reports: Volum 8 Zhang, Qirui; Kopp, Martina Elisabeth Luise; Babiak, Igor; Fernandes, Jorge Manuel de Oliveira
Larval dietary protein complexity affects the regulation of muscle growth and the expression of DNA methyltransferases in Senegalese sole 2018, Aquaculture: Volum 491 s. 28-38 Canada, Paula; Engrola, Sofia; Mira, Sara; Teodosio, Rita; Yust, Maria; Sousa, Vera
GIA2018: 5th International Symposium on Genomics in Aquaculture : Book of Abstracts 2018, Fernandes, Jorge Manuel de Oliveira; Sarropoulou, Elena; Kiron , Viswanath; Power, Deborah M.; Liu, John
Growth and development of skeletal anomalies in diploid and triploid Atlantic salmon (Salmo salar) fed phosphorus-rich diets with fish meal and hydrolyzed fish protein 2018, PLOS ONE: Volum 13 Peruzzi, Stefano; Puvanendran, Velmurugu; Riesen, Guido; Ripman Seim, Rudi; Hagen, Ørjan; Martinez-Llorens, Silvia
The Intestinal Mycobiota in Wild Zebrafish Comprises Mainly Dothideomycetes While Saccharomycetes Predominate in Their Laboratory-Reared Counterparts 2018, Frontiers in Microbiology: Volum 9 Siriyappagouder, Prabhugouda; Kiron , Viswanath; Jep, Lokesh; Rajeish, Moger; Kopp, Martina Elisabeth Luise; Fernandes, Jorge Manuel de Oliveira
Exposure to yeast shapes the intestinal bacterial community assembly in zebrafish larvae 2018, Frontiers in Microbiology: Volum 9 Siriyappagouder, Prabhugouda; Galindo-Villegas, Jorge; Jep, Lokesh; Mulero, Victoriano; Fernandes, Jorge Manuel de Oliveira; Kiron , Viswanath
Parental micronutrient deficiency distorts liver DNA methylation and expression of lipid genes associated with a fatty-liver-like phenotype in offspring 2018, Scientific Reports: Volum 8 Skjærven, Kaja Helvik; Jakt, Lars Martin; Fernandes, Jorge Manuel de Oliveira; Dahl, John Arne; Adam, Anne-Catrin; Klughammer, Johanna
Succession of embryonic and the intestinal bacterial communities of Atlantic salmon (Salmo salar) reveals stage‐specific microbial signatures 2018, MicrobiologyOpen: Volum 8 s. 1-16 Jep, Lokesh; Kiron , Viswanath; Sipkema, Detmer; Fernandes, Jorge Manuel de Oliveira; Moum, Truls Borg
Exposure to Yeast Shapes the Intestinal Bacterial Community Assembly in Zebrafish Larvae 2018, Frontiers in Microbiology: Volum 9 s. 1-14 Prabhugouda, Siriyappagouder; Galindo-Villegas, Jorge; Lokesh, Jep; Victoriano, Mulero; Fernandes, Jorge Manuel de Oliveira; Kiron , Viswanath
2017
Dietary protein complexity modulates growth, protein utilisation and the expression of protein digestion-related genes in Senegalese sole larvae 2017, Aquaculture: Volum 479 s. 273-284 Canada, Paula; Conceicao, Luis E C; Mira, Sara; Teodosio, Rita; Fernandes, Jorge Manuel de Oliveria; Barrios, Carmen
Dynamics of miRNA transcriptome during gonadal development of zebrafish 2017, Scientific Reports: Volum 7 Presslauer, Christopher Edward; Kopp, Martina; Fernandes, Jorge; Babiak, Igor Szczepan; Bizuayehu, Teshome Tilahun
Dietary yeast cell wall extract alters the proteome of the skin mucous barrier in atlantic salmon (Salmo salar): Increased abundance and expression of a calreticulin-like protein 2017, PLOS ONE: Volum 12 Micallef, Giulia; Cash, Phillip; Fernandes, Jorge; Rajan, Binoy; Tinsley, John W.; Bickerdike, Ralph
2016
A little goes long way: Improved growth in Atlantic cod (Gadus morhua) fed small amounts of wild zooplankton 2016, Aquaculture: Volum 451 s. 271-282 Katan, T.; Nash, G.W.; Rise, Matthew L.; Hall, J.R.; Fernandes, Jorge; Boyce, Danny
Plant protein blends in diets for Senegalese sole affect skeletal muscle growth, flesh texture and the expression of related genes 2016, Aquaculture: Volum 453 s. 77-85 Valente, Luisa M.P.; Cabral, Eduarda; Sousa, Vera; Cunha, Luis; Fernandes, Jorge
The supplementation of a microdiet with crystalline indispensable amino-acids affects muscle growth and the expression pattern of related genes in Senegalese sole (Solea senegalensis) larvae 2016, Aquaculture: Volum 458 s. 158-169 Canada, Paula; Engrola, Sofia; Mira, Sara; Teodosio, Rita; Fernandes, Jorge; Sousa, Vera
Innate immune response, intestinal morphology and microbiota changes in Senegalese sole fed plant protein diets with probiotics or autolysed yeast 2016, Applied Microbiology and Biotechnology: Volum 100 s. 7223-7238 Batista, Sonia; Medina, A; Pires, M.A.; Moriñigo, M.A.; Sansuwan, K; Fernandes, Jorge
See-Thru-Gonad zebrafish line: developmental and functional validation 2016, Reproduction: Volum 152 s. 507-517 Presslauer, Christopher Edward; Bizuayehu, Teshome Tilahun; Razmi, Komeil; Fernandes, Jorge; Babiak, Igor
Parental vitamin deficiency affects the embryonic gene expression of immune-, lipid transport-and apolipoprotein genes 2016, Scientific Reports: Volum 6 Skjærven, Kaja Helvik; Jakt, Lars Martin; Dahl, John Arne; Espe, Marit; Aanes, Håvard; Hamre, Kristin
Changes in intestinal microbiota, immune- and stress-related transcript levels in Senegalese sole (Solea senegalensis) fed plant ingredient diets intercropped with probiotics or immunostimulants 2016, Aquaculture: Volum 458 s. 149-157 Batista, Sonia; Ozorio, Rodrigo; Kollias, Spyridon; Dhanasiri, Anusha; Lokesh, Jep; Kiron, Viswanath
Substantial Downregulation of Myogenic Transcripts in Skeletal Muscle of Atlantic Cod during the Spawning Period 2016, PLOS ONE: Volum 11 Nagasawa, Kazue; Sarropoulou, Elena; Edvardsen, Vigdis; Fernandes, Jorge
2015
Contrasting transcriptome response to thermal stress in two key zooplankton species, Calanus finmarchicus and C. glacialis 2015, Marine Ecology Progress Series: Volum 534 s. 79-93 Smolina, Irina; Kollias, Spyros; Møller, Eva Friis; Lindeque, Penelope K.; Sundaram, Arvind; Fernandes, Jorge
Identification of the Atlantic cod L-amino acid oxidase and its alterations following bacterial exposure 2015, Developmental and Comparative Immunology: Volum 50 s. 116-120 Kitani, Yoichiro; Fernandes, Jorge; Kiron , Viswanath
Phylogeny, Anatomy and Physiology of Ancient Fishes 2015, CRC Press: Zaccone, Giacomo; Dabrowski, Konrad; Hedrick, Michael; Fernandes, Jorge; Icardo, Jose
2014
In vitro and ex vivo models indicate that the molecular clock in fast skeletal muscle of Atlantic cod is not autonomous 2014, Molecular Biology Reports: Volum 41 s. 6679-6689 Lazado, Carlo Cabacang; Kumaratunga, Palawinnage Hiruni Senari; Nagasawa, Kazue; Babiak, Igor; Caipang, Christopher; Fernandes, Jorge
Thermal plasticity of the miRNA transcriptome during Senegalese sole development 2014, BMC Genomics: Volum 15 Campos, Catarina; Sundaram, Arvind; Valente, L. M. P.; Conceicao, Luis E.C.; Engrola, Sofia; Fernandes, Jorge
Daily Rhythmicity of Clock Gene Transcripts in Atlantic Cod Fast Skeletal Muscle 2014, PLOS ONE: Volum 9 Lazado, Carlo Cabacang; Kumaratunga, Palawinnage Hiruni Senari; Nagasawa, Kazue; Babiak, Igor; Gianetto, Alessia; Fernandes, Jorge
Circadian rhythmicity and photic plasticity of myosin gene transcription in fast skeletal muscle of Atlantic cod (Gadus morhua) 2014, Marine Genomics: Volum 18 s. 21-29 Lazado, Carlo Cabacang; Nagasawa, Kazue; Babiak, Igor; Kumaratunga, Palawinnage Hiruni Senari; Fernandes, Jorge
The conserved Phe GH5 of importance for hemoglobin intersubunit contact is mutated in gadoid fish 2014, BMC Evolutionary Biology: Volum 14 Andersen, Øivind; Rosa, Maria; Yadav, Prakash; Pirolli, Davide; Fernandes, Jorge; Berg, Paul Ragnar
Sexually dimorphic transcription of estrogen receptors in cod gonads throughout a reproductive cycle 2014, Journal of Molecular Endocrinology: Volum 52 s. 357-371 Nagasawa, Kazue; Presslauer, Christopher; Kirtiklis, Lech; Babiak, Igor; Fernandes, Jorge
Protein profiling in the gut of Penaeus monodon gavaged with oral WSSV-vaccines and live white spot syndrome virus 2014, Proteomics: Volum 14 s. 1660-1673 Kulkarni, Amod; Kiron, Viswanath; Rombout, Jan H. W. M.; Brinchmann, Monica Fengsrud; Fernandes, Jorge; Sudheer, Naduvilamuriparampu S.
Molecular regulation of muscle development and growth in Senegalese sole larvae exposed to temperature fluctuations 2014, Aquaculture: Volum 432 s. 418-425 Campos, Catarina; Valente, Luisa M.P.; Conceicao, Luis E C; Engrola, Sofia; Fernandes, Jorge
Thermal stress resistance of the brown alga Fucus serratus along the North-Atlantic coast: Acclimatization potential to climate change 2014, Marine Genomics: Volum 13 s. 27-36 Jüterbock, Alexander; Kollias, Spyros; Smolina, Irina; Fernandes, Jorge; Coyer, James A.; Olsen, Jeanine L
Influence of continuous light treatment on expression of stress biomarkers in Atlantic cod 2014, Developmental and Comparative Immunology: Volum 44 s. 30-34 Giannetto, Alessia; Fernandes, Jorge; Nagasawa, Kazue; Mauceri, Angela; Maisano, Maria; De Domenico, Elena
Profiling of the embryonic Atlantic halibut (Hippoglossus hippoglossus L.) transcriptome reveals maternal transcripts as potential markers of embryo quality 2014, BMC Genomics: Volum 15 Mommens, Maren; Fernandes, Jorge; Tollefsen, Knut-Erik; Johnston, Ian A.; Babiak, Igor
Evaluation of immune and apoptosis related gene responses using an RNAi approach in vaccinated Penaeus monodon during oral WSSV infection 2014, Marine Genomics: Volum 18 s. 55-65 Kulkarni, Amod; Caipang, Christopher; Kiron, Viswanath; Rombout, Jan H. W. M.; Fernandes, Jorge; Brinchmann, Monica Fengsrud
Induced autoimmunity against gonadal proteins affects gonadal development in juvenile zebrafish 2014, PLOS ONE: Volum 9 Presslauer, Christopher; Nagasawa, Kazue; Dahle, Dalia; Babiak, Joanna; Fernandes, Jorge; Babiak, Igor
Transcriptional regulation of antimicrobial peptides in mucosal tissues of Atlantic cod Gadus morhua L. in response to different stimuli 2014, Aquaculture Research: Volum 45 s. 1893-1905 Jareeporn, Ruangsri; Jeppinamogeru, Lokesh; Fernandes, Jorge; Viswanath, Kiron
2013
Localization and functional properties of two galectin-1 proteins in Atlantic cod (Gadus morhua) mucosal tissues 2013, Developmental and Comparative Immunology: Volum 40 s. 83-93 Rajan, Binoy; Kiron, Viswanath; Fernandes, Jorge; Brinchmann, Monica Fengsrud
Liver transcriptome changes in zebrafish during acclimation to transport-associated stress 2013, PLOS ONE: Volum 8 Dhanasiri, Anusha; Fernandes, Jorge; Viswanath, Kiron
Transcriptome of Atlantic cod (Gadus morhua L.) early embryos from farmed and wild broodstocks 2013, Marine Biotechnology: Volum 15 s. 677-694 Lanes, Carlos Frederico Ceccon; Bizuayehu, Teshome; Fernandes, Jorge; Kiron, Viswanath; Babiak, Igor
What determines growth potential and juvenile quality of farmed fish species? 2013, Reviews in Aquaculture: Volum 5 s. S168-S193 Valente, Luisa M.P.; Moutou, Katerina; Conceição, Luis E.C.; Engrola, Sofia; Fernandes, Jorge; Johnston, Ian A.
Incubation temperature induces changes in muscle cellularity and gene expression in Senegalese sole (Solea senegalensis) 2013, Gene: Volum 516 s. 209-217 Campos, Catarina; Valente, Luisa M.P.; Conceicao, Luis E.C.; Engrola, Sofia; Sousa, Vera; Rocha, Eduardo
Influence of photoperiod on the expression of DNA (cytosine-5) methyltransferases in Atlantic cod 2013, Gene: Volum 519 s. 222-230 Gianetto, Alessia; Nagasawa, Kazue; Fasulo, Salvatore; Fernandes, Jorge
Temperature affects methylation of the myogenin putative promoter, its expression and muscle cellularity in Senegalese sole larvae 2013, Epigenetics: Volum 8 s. 389-397 Campos, Catarina; Valente, Luisa M.P.; Conceicao, Luis E.C.; Engrola, Sofia; Fernandes, Jorge
Rearing temperature affects Senegalese sole (Solea senegalensis) larvae protein metabolic capacity 2013, Fish Physiology & Biochemistry: Volum 39 s. 1485-1496 Campos, Catarina; Castanheira, M. Filipa; Engrola, Sofia; Valente, Luisa M.P.; Fernandes, Jorge; Conceicao, Luis E.C.
Identification and migration of primordial germ cells in Atlantic salmon, Salmo salar: Characterization of Vasa, Dead End, and Lymphocyte antigen 75 genes 2013, Molecular Reproduction and Development: Volum 80 s. 118-131 Nagasawa, Kazue; Fernandes, Jorge; Yoshizaki, Goro; Miwa, Misako; Babiak, Igor
Characterization of novel precursor miRNAs using next generation sequencing and prediction of miRNA targets in Atlantic halibut 2013, PLOS ONE: Volum 8 Bizuayehu, Teshome; Fernandes, Jorge; Johansen, Steinar Daae; Babiak, Igor
A Novel Beta-Defensin Antimicrobial Peptide in Atlantic Cod with Stimulatory Effect on Phagocytic Activity 2013, PLOS ONE: Volum 8 Jareeporn, Ruangsri; Kitani, Yoichiro; Viswanath, Kiron; Jeppinamogeru, Lokesh; Brinchmann, Monica Fengsrud; Karlsen, Bård Ove
Thermal conditions during larval pelagic phase influence subsequent somatic growth of Senegalese sole by modulating gene expression and muscle growth dynamics 2013, Aquaculture: Volum 414-415 s. 46-55 Campos, Catarina; Fernandes, Jorge; Conceição, Luís E.C.; Engrola, Sofia; Sousa, Vera; Valente, Luisa M.P.
Acclimation of zebrafish to transport stress 2013, Zebrafish: Volum 10 s. 87-98 Dhanasiri, Anusha; Fernandes, Jorge; Viswanath, Kiron
2012
Validation of endogenous reference genes for qPCR quantification of muscle transcripts in Atlantic cod subjected to different photoperiod regimes Aquaculture 2012, IntechOpen: s. 81-92 Nagasawa, Kazue; Lazado, Carlo Cabacang; Fernandes, Jorge
Expression of vasa and nanos3 during primordial germ cell formation and migration in Atlantic cod (Gadus morhua L.) 2012, Theriogenology: Volum 78 s. 1262-1277 Presslauer, Christopher; Nagasawa, Kazue; Fernandes, Jorge; Babiak, Igor
Sex-biased miRNA expression in Atlantic halibut (Hippoglossus hippoglossus) brain and gonads 2012, Sexual Development: Volum 6 s. 257-266 Bizuayehu, Teshome; Babiak, Joanna; Norberg, Birgitta; Fernandes, Jorge; Johansen, Steinar; Babiak, Igor
Profiling of key apoptotic, stress, and immune-related transcripts during embryonic and postembryonic development of Atlantic cod (Gadus morhua L.) 2012, Theriogenology: Volum 78 s. 1583-1596 Lanes, Carlos Frederico Ceccon; Fernandes, Jorge; Viswanath, Kiron; Babiak, Igor
Ubiquitous presence of piscidin-1 in Atlantic cod as evidenced by immunolocalisation 2012, BMC Veterinary Research: Volum 8 Ruangsri , Jareeporn; Fernandes, Jorge; Rombout, Jan H. W. M.; Brinchmann, Monica F; Viswanath, Kiron
Nucleotide Enrichment of Live Feed: A Promising Protocol for Rearing of Atlantic Cod Gadus morhua Larvae 2012, Marine Biotechnology: Volum 14 s. 544-558 Lanes, Carlos Fredrico Ceccon; Bolla, Sylvie; Fernandes, Jorge; Nicolaisen, Ove; Viswanath, Kiron; Babiak, Igor
Molecular evolution of zebrafish dnmt3 genes and thermal plasticity of their expression during embryonic development 2012, Gene: Volum 500 s. 93-100 Campos, Catarina; Valente, Luisa M.P.; Fernandes, Jorge
Differential expression and biological activity of two piscidin paralogues and a novel splice variant in Atlantic cod (Gadus morhua L.) 2012, Fish and Shellfish Immunology: Volum 32 s. 396-406 Ruangsri , Jareeporn; Salger, Scott; Caipang, Christopher; Viswanath, Kiron; Fernandes, Jorge
Photoperiod Influences Growth and mll (Mixed-Lineage Leukaemia) Expression in Atlantic Cod 2012, PLOS ONE: Volum 7 Nagasawa, Kazue; Gianetto, Alessia; Fernandes, Jorge
Transcriptional regulation of cytokines in the intestine of Atlantic cod fed yeast derived mannan oligosaccharide or beta-Glucan and challenged with Vibrio anguillarum 2012, Fish and Shellfish Immunology: Volum 33 s. 626-631 Lokesh, Jep; Fernandes, Jorge; Korsnes, Kjetil; Bergh, Øivind; Brinchmann, Monica Fengsrud; Viswanath, Kiron
Glutamine synthetase activity and the expression of three glul paralogues in zebrafish during transport 2012, Comparative Biochemistry and Physiology - Part B: Biochemistry & Molecular Biology: Volum 163 s. 274-284 Dhanasiri, Anusha; Fernandes, Jorge; Viswanath, Kiron
Differential expression patterns of conserved miRNAs and isomiRs during Atlantic halibut development 2012, BMC Genomics: Volum 13 Bizuayehu, Teshome; Lanes, Carlos Fredrico Ceccon; Furmanek, Tomasz; Karlsen, Bård Ove; Fernandes, Jorge; Johansen, Steinar
Positive selection pressure within teleost toll-like receptors tlr21 and tlr22 subfamilies and their response to temperature stress and microbial components in zebrafish 2012, Molecular Biology Reports: Volum 39 s. 8965-8975 Sundaram, Arvind; Consuegra, S; Viswanath, Kiron; Fernandes, Jorge
Exploring the Transcriptome of Atlantic Salmon (Salmo salar) Skin, a Major Defense Organ 2012, Marine Biotechnology: Volum 14 s. 559-569 Micallef, Giulia; Bickerdike, Ralph; Reiff, Caroline; Fernandes, Jorge; Bowman, Alan S.; Martin, Samuel A.M.
Diversification of the expanded teleost-specific toll-like receptor family in Atlantic cod, Gadus morhua 2012, BMC Evolutionary Biology: Volum 12 Sundaram, Arvind; Viswanath, Kiron; Dopazo, Joaquin; Fernandes, Jorge
Biochemical composition and performance of Atlantic cod (Gadus morhua L.) eggs and larvae obtained from farmed and wild broodstocks 2012, Aquaculture: Volum 324 s. 267-275 Lanes, Carlos Fredrico Ceccon; Bizuayehu, Teshome; Bolla, Sylvie; Camila, Martins; Fernandes, Jorge; Adalto, Bianchini
2011
Proteome reference map of the skin mucus of Atlantic cod (Gadus morhua) revealing immune competent molecules 2011, Fish and Shellfish Immunology: Volum 31 s. 224-231 Rajan, Binoy; Fernandes, Jorge; Caipang, Christopher; Viswanath, Kiron; Rombout, Jan H. W. M.; Brinchmann, Monica
Novel application of nitrifying bacterial consortia to ease ammonia toxicity in ornamental fish transport units: trials with zebrafish 2011, Journal of Applied Microbiology: Volum 111 s. 278-292 Dhanasiri, Anusha; Kiron, Viswanath; Fernandes, Jorge; Bergh, Øivind; Powell, Mark Darryn
Application of antimicrobial polypeptide host defenses to aquaculture: Exploitation of downregulation and upregulation responses 2011, Comparative Biochemistry and Physiology - Part D:Genomics and Proteomics: Volum 6 s. 44-54 Noga, Ed; Ullal, Anirudh; Corrales, Jone; Fernandes, Jorge
2010
Dietary lipid levels have a remarkable impact on the expression of growth-related genes in Senegalese sole (Solea senegalensis Kaup) 2010, Journal of Experimental Biology: Volum 213 s. 200-209 Campos, C.; Valente, L. M. P.; Borges, P.; Bizuayehu, Teshome; Fernandes, Jorge
Evolution of a multifunctional gene: The warm temperature acclimation protein Wap65 in the European seabass Dicentrarchus labrax 2010, Molecular Phylogenetics and Evolution: Volum 55 s. 640-649 Sarropoulou, Elena; Fernandes, Jorge; Mitter, Karin; Magoulas, Antonios; Mulero, Victoriano; Sepulcre, Maria
Antimicrobial activity in the tissues of Atlantic cod (Gadus morhua L.) 2010, Fish and Shellfish Immunology: Volum 28 s. 879-886 Ruangsri, Jareeporn; Fernandes, Jorge; Brinchmann, Monica Fengsrud; Kiron, Viswanath
Atlantic Cod Piscidin and Its Diversification through Positive Selection 2010, PLOS ONE: Volum 5 Fernandes, Jorge; Ruangsri, Jareeporn ; Kiron, Viswanath
Maternal gene expression in Atlantic halibut (Hippoglossus hippoglossus L.) and its relation to egg quality 2010, BMC Research Notes: Volum 3 s. 11 Mommens, Maren; Fernandes, Jorge; Bizuayehu, Teshome; Bolla, Sylvie; Johnston, Ian A.; Babiak, Igor
2009
Evolution of a multifunctional gene: The warm temperature acclimation protein Wap65 in the European seabass Dicentrarchus labrax 2009, Molecular Phylogenetics and Evolution: Sarropoulou, Elena; Fernandes, Jorge; Mitter, Karin; Magoulas, Antonios; Mulero, Victoriano; Sepulcre, Maria
Dietary lipid levels have a remarkable impact on the expression of growth-related genes in Senegalese sole (Solea senegalensis Kaup) 2009, Journal of Experimental Biology: Volum 213 s. 200-209 Campos, Catarina; Valente, Luisa; Borges, Pedro; Bizuayehu, Teshome; Fernandes, Jorge
Expression of growth-related genes in muscle during fasting and refeeding of juvenile Atlantic halibut, Hippoglossus hippoglossus L 2009, Comparative Biochemistry and Physiology - Part B: Biochemistry & Molecular Biology: Volum 152 s. 47-53 Hagen, Ørjan; Fernandes, Jorge; Solberg, Christel; Johnston, Ian
Antimicrobial peptides of the innate immune system Fish Defences : B.1: Immunology 2009, Science Publishers Inc.: s. 241-275 Smith, Valerie; Fernandes, Jorge
2008
Genomic, evolutionary, and expression analyses of cee, an ancient gene involved in normal growth and development 2008, Genomics: Volum 91 s. 315-325 Fernandes, Jorge; MacQueen, Daniel; Lee, Tung-Tai; Johnston, Ian A.
Selection of suitable reference genes for real-time PCR studies of Atlantic halibut development 2008, Comparative Biochemistry and Physiology - Part B: Biochemistry & Molecular Biology: Volum 150 s. 23-32 Fernandes, Jorge; Mommens, Maren; Hagen, Ørjan; Babiak, Igor; Solberg, Christel
Crustins: Enigmatic WAP domain-containing antibacterial proteins from crustaceans 2008, Developmental and Comparative Immunology: Volum 32 s. 758-772 Smith, Valerie; Fernandes, Jorge; Kemp, Graham; Hauton, Chris
2007
FoxK1 splice variants show developmental stage-specific plasticity of expression with temperature in the tiger pufferfish 2007, Journal of Experimental Biology: Volum 210 s. 3461-3472 Fernandes, Jorge; Johnston, Ian A.; MacKenzie, Matthew; Kinghorn, James
Profiling of maternal and developmental-stage specific mRNA transcripts in Atlantic halibut Hippoglossus hippoglossus 2007, Gene: Volum 386 s. 202-210 Bai, Jialin; Solberg, Christel; Fernandes, Jorge; Johnston, Ian A.
2024
Impact of photoperiod manipulation on fast muscle transcriptome and growth norms of Atlantic cod (Gadus morhua) 2024, Colonna, Lorenzo; Konstantinidis, Ioannis; Fernandes, Jorge Manuel de Oliveira
Single-cell transcriptome and epigenetic profiling of the pituitary gland provide insights into teleost puberty 2024, Konstantinidis, Ioannis; Daniels, Rose Ruiz; Colonna, Lorenzo; Robledo, Diego; Fernandes, Jorge Manuel de Oliveira
Deciphering the molecular mechanisms of puberty in Atlantic cod (Gadus morhua) for enhanced aquaculture sustainability 2024, Konstantinidis, Ioannis; Colonna, Lorenzo; Silva, Dana; Siriyappagouder, Prabhugouda; Puvanendran, Velmurugu; Hansen, Øyvind J
2023
Editorial: Methodological approaches for fish reproduction management 2023, Frontiers in Physiology: Volum 14 Mechaly, Alejandro S.; Fernandes, Jorge Manuel de Oliveira; Costas, Benjamín; Fatsini, Elvira
Comparative transcriptome analysis reveals a serotype-specific immune response in Nile tilapia (Oreochromis niloticus) infected with Streptococcus agalactiae 2023, Appel, Renan; Konstantinidis, Ioannis; Pretto-Giordano, Lucienne; Vilas-Boas, Laurival; Fernandes, Jorge Manuel de Oliveira
Changes of fast muscle cellularity in male and female Nile tilapia (Oreochromis niloticus) over three generations of domestication 2023, Nord universitet: Iqbal, Ramsha; Fernandes, Jorge Manuel de Oliveira; Bjørnevik, Marit; Galindo-Villegas, Jorge
2022
Nutrient-sensitive epigenetic regulation in salmon muscle 2022, Adam, Anne-Catrin; Saito, Takaya; Putman, A.L.K.; Whatmore, Paul; Espe, Marit; Fernandes, Jorge Manuel de Oliveira
Atlantic cod facing climate-driven warming: Reproductive physiology under challenging environmental conditions 2022, Maud, A.; Kleppe, Lene; Andersson, Eva; Norberg, Birgitta; Karlsen, Ørjan; Whatmore, Paul
Seasonal broodstock management influences the nutritional status, gene expression and epigenetic gene regulation in Atlantic salmon progeny 2022, Skjærven, Kaja Helvik; Saito, Takaya; Fernandes, Jorge Manuel de Oliveira; Mommens, Maren; Adam, Anne-Catrin; Espe, Marit
Transcriptomic profiling analysis of Nile tilapia (Oreochromis niloticus) challenged with two different serotypes strains of Streptococcus agalactiae 2022, Appel, Renan; Siqueira, Karine; Pretto-Giordano, Lucienne; Vilas-Boas, Laurival; Fernandes, Jorge Manuel de Oliveira
Mitochondrial DNA Methylation Profiling in Nile Tilapia (Oreochromis niloticus) through Nanopore Sequencing 2022, Tripathy, Partha Sarathi; Nedoluzhko, Artem; Skjærven, Kaja Helvik; Piferrer, Francesc; Fernandes, Jorge Manuel de Oliveira
CIRCPRIME: A WEB-BASED PRIMER DESIGN TOOL FOR CIRCULAR RNAS 2022, Aquaculture Journal: Volum 2 s. 160 Sharko, Fedor S.; Rbbani, Md Golam; Siriyappagouder, Prabhugouda; Galindo-Villegas, Jorge; Nedoluzhko, Artem; Fernandes, Jorge Manuel de Oliveira
CIRCULAR RNAS AS POTENTIAL GROWTH BIOMARKERS IN NILE TILAPIA 2022, Aquaculture Journal: Volum 2 s. 144 Rbbani, Md Golam; Nedoluzhko, Artem; Siriyappagouder, Prabhugouda; Sharko, Fedor S.; Galindo-Villegas, Jorge; Raeymaekers, Joost A. M.
TARGETING MYOGENESIS MODULATION VIA CRISPR/CAS9-MEDIATION IN FARMED NILE TILAPIA 2022, Aquaculture Journal: Volum 2 s. 145 Galindo-Villegas, Jorge; Konstantinidis, Ioannis; Fernandes, Jorge Manuel de Oliveira
2021
Seasonal broodstock management alters the epigenome of the next generation of Atlantic salmon (Salmo salar) 2021, Skjærven, Kaja Helvik; Saito, Takaya; Fernandes, Jorge Manuel de Oliveira; Whatmore, Paul; Araujo, Pedro; Mommens, Maren
Seasonal broodstock management influences the nutritional status, gene expression and epigenetic gene regulation in Atlantic salmon progeny 2021, Skjærven, Kaja Helvik; Saito, Takaya; Fernandes, Jorge Manuel de Oliveira; Mommens, Maren; Whatmore, Paul; Adam, Anne-Catrin
Epigenetic mechanism of improved post-smolt growth in Atlantic salmon fed a moderate surplus package of methionine, folic acid, vitamin B6 and B12 throughout smoltification 2021, Skjærven, Kaja Helvik; Adam, Anne-Catrin; Saito, Takaya; Whatmore, Paul; Putman, A.L.K.; Fernandes, Jorge Manuel de Oliveira
Differences in the circular RNA transcriptome between wild and captive-bred Nile tilapia 2021, Rbbani, Md Golam; Nedoluzhko, Artem; Sharko, Fedor; Konstantinidis, Ioannis; Fernandes, Jorge Manuel de Oliveira
Exploration of circRNA , miRNA and mRNA expression to identify their role in growth regulation in Nile tilapia 2021, Rbbani, Md Golam; Nedoluzhko, Artem; Siriyappagouder, Prabhugouda; Raeymaekers, Joost A. M.; Galindo-Villegas, Jorge; Fernandes, Jorge Manuel de Oliveira
Differences in liver DNA hydroxymethylation reflect the growth phenotype 2021, Konstantinidis, Ioannis; Sætrom, Pål; Liedtke, Hannes; Pohlmann, Caroline; Tsoulia, Thomais; Fernandes, Jorge Manuel de Oliveira
Circular RNA workflow analysis and its application in aquaculture 2021, Nedoluzhko, Artem; Rbbani, Md Golam; Sharko, Fedor; Siriyappagouder, Prabhugouda; Galindo-Villegas, Jorge; Fernandes, Jorge Manuel de Oliveira
Trends and limitations of epigenetic biomarkers 2021, Fernandes, Jorge Manuel de Oliveira
Unveiling the massive epigenome changes that occur during Nile tilapia domestication 2021, Fernandes, Jorge Manuel de Oliveira
circRNA, miRNA and mRNA muscle transcriptomes indicate their role in growth regulation in Nile tilapia 2021, Rbbani, Md Golam; Nedoluzhko, Artem; Siriyappagouder, Prabhugouda; Raeymaekers, Joost A. M.; Galindo-Villegas, Jorge; Fernandes, Jorge Manuel de Oliveira
Circular RNA host gene prediction in Nile tilapia using the novel circParser pipeline 2021, Nedoluzhko, Artem; Sharko, Fedor; Rbbani, Md Golam; Teslyuk, Anton; Konstantinidis, Ioannis; Fernandes, Jorge Manuel de Oliveira
DNA hydroxymethylation is linked to higher growth rate in Nile tilapia 2021, Konstantinidis, Ioannis; Sætrom, Pål; Brieuc, Marine Servane Ono; Jakobsen, Kjetill Sigurd; Liedtke, Hannes; Pohlmann, Caroline
The mitochondrial 5-methylcytosine profile in Nile tilapia (Oreochromis niloticus) 2021, Nedoluzhko, Artem; Mjelle, Robin; Renström, Maria; Skjærven, Kaja Helvik; Piferrer, Francesc; Fernandes, Jorge Manuel de Oliveira
Exploring epigenetic resistance to infectious salmon anaemia in Atlantic salmon by genome-wide bisulfite sequencing in heart tissue 2021, Ekvall, Hans Erland; Fernandes, Jorge Manuel de Oliveira; Konstantinidis, Ioannis; Andersen, Øivind; Tetens, Jens
2020
Moderat overskudd av mikronæringsstoff i laksefôr gir økt vekst og endrer ernæringssensitive epigenetiske reguleringsmekanismer i muskel til atlantisk laks 2020, Adam, Anne-Catrin; Espe, Marit; Saito, Takaya; Whatmore, Paul; Fernandes, Jorge Manuel de Oliveira; Skjærven, Kaja Helvik
Circular RNA host gene and orthologue prediction using
the self-designed CircParser pipeline 2020, Nedoluzhko, Artem; Sharko, Fedor S.; Rabbani, Md Golam; Teslyuk, Anton; Konstantinidis, Ioannis; Fernandes, Jorge Manuel de Oliveira
Hydroxymethylation changes during early embryonic
development in zebrafish 2020, Nedoluzhko, Artem; Dandara Da Silva Berrutti, Paula; Guimarães, Igo Gomes; Konstantinidis, Ioannis; Babiak, Igor; Fernandes, Jorge Manuel de Oliveira
Mitochondrial DNA methylation in Nile tilapia Oreochromis niloticus 2020, Fernandes, Jorge Manuel de Oliveira; Renström, Maria
Epigenetics in aquaculture 2020, Fernandes, Jorge Manuel de Oliveira
2019
Nutriepigenomic effects of wheat gluten-based diet on Liver of Atlantic salmon 2019, Dhanasiri, Anusha Krishanthi Shyama; Chen, Xianquan; Berge, Gerd Marit; Bogevik, André Sture; Fæste, Christiane Kruse; Fernandes, Jorge Manuel de Oliveira
Hooking the bigger fish through epigenetics 2019, EU Research: Fernandes, Jorge Manuel de Oliveira
Circulating miRNAs as potential non-invasive biomarkers of growth in Nile tilapia (Oreochromis niloticus) 2019, Nord universitet: Fernandes, Jorge Manuel de Oliveira; Wardale, Alex
Nutrient-responsive epigenetic programming in Atlantic salmon and zebrafish 2019, Adam, Anne-Catrin; Whatmore, Paul; Saito, Takaya; Espe, Marit; Fernandes, Jorge Manuel de Oliveira; Valente, Luisa M.P.
Epigenetic effects of dietary micronutrients in Atlantic salmon (Salmo salar) muscle 2019, Adam, Anne-Catrin; Espe, Marit; Saito, Takaya; Whatmore, Paul; Fernandes, Jorge Manuel de Oliveira; Skjærven, Kaja Helvik
Erratum: Lactobacillus dominate in the intestine of Atlantic salmon fed dietary probiotics(Front. Microbiol. (2019) 9, (3247), 10.3389/fmicb.2018.03247) 2019, Frontiers in Microbiology: Volum 10 Gupta, Shruti; Fečkaninová, Adriána; Jep, Lokesh; Koščová, Jana; Sørensen, Mette; Fernandes, Jorge Manuel de Oliveira
Developmental plasticity of growth in teleosts 2019, Fernandes, Jorge Manuel de Oliveira
Muscle transcriptome changes within one generation of Nile tilapia domestication 2019, Fernandes, Jorge Manuel de Oliveira; Konstantinidis, Ioannis; Nedoluzhko, Artem; Mjelle, Robin
Tissue-specific hydroxymethylome profiles of Nile tilapia Oreochromis niloticus at single nucleotide resolution 2019, Konstantinidis, Ioannis; Sætrom, Pål; Fernandes, Jorge Manuel de Oliveira
Differences in liver hydroxymethylomes of Nile tilapia with distinct growth rates 2019, Fernandes, Jorge Manuel de Oliveira; Konstantinidis, Ioannis; Pohlmann, Caroline; Tsoulia, Thomais; Liedtke, Hannes
LIVER TRANSCRIPTOME OF JUVENILE DIPLOID AND TRIPLOID
ATLANTIC SALMON (SALMO SALAR L.) 2019, Odei, Derrick Kwame; Peruzzi, Stefano; Hagen, Ørjan; Fernandes, Jorge Manuel de Oliveira
Development and validation of a liquid chromatography high-resolution mass spectrometry method for the simultaneous determination of mycotoxins and phytoestrogens in plant-based fish feed and exposed fish. 2019, Johny, Amritha; Fæste, Christiane Kruse; Bogevik, André Sture; Berge, Gerd Marit; Fernandes, Jorge Manuel de Oliveira; Ivanova, Lada
2018
Circulating micrornas as potential biomarkers of growth in Nile tilapia (Oreochromis niloticus) 2018, Wardale, Alex; Podgorniak, Tomasz Krzysztof; Renström, Maria; Babiak, Igor; Fernandes, Jorge Manuel de Oliveira
Nutriepigenomic effects of plant protein-based aquafeeds on zebrafish intestine 2018, Dhanasiri, Anusha Krishanthi Shyama; Chen, Xianquan; Dahle, Dalia; Siriyappagouder, Prabhugouda; Fæste, Christiane Kruse; Fernandes, Jorge Manuel de Oliveira
Fast muscle hydroxymethylation patterns in wild and captive Nile tilapia (Oreochromis niloticus) provide insights into fish domestication 2018, Konstantinidis, Ioannis; Sætrom, Pål; Fernandes, Jorge Manuel de Oliveira
Growth-related epigenetic crossroads in fast muscle of Nile tilapia sharing a similar genetic background 2018, Podgorniak, Tomasz Krzysztof; Brockmann, Sven; Fernandes, Jorge Manuel de Oliveira
DNA hydroxy- and methylation profiles of the Nile tilapia pituitary link hypermethylation and hyperhydroxymethylation to faster growth 2018, Ekvall, Hans; Konstantinidis, Ioannis; Podgorniak, Tomasz Krzysztof; Fernandes, Jorge Manuel de Oliveira
Nutrigenomic effects of plant protein-based aquafeeds on fish muscle and spleen 2018, Dhanasiri, Anusha Krishanthi Shyama; Johny, Amritha; Fæste, Christiane Kruse; Bogevik, André Sture; Zhang, Qirui; Fernandes, Jorge Manuel de Oliveira
«Nutrigenomiske» effekter av planteproteinbaserte fôr på fiskemuskulatur og milt 2018, Dhanasiri, Anusha Krishanthi Shyama; Johny, Amritha; Fæste, Christiane Kruse; Bogevik, André Sture; Fernandes, Jorge Manuel de Oliveira
Growth-associated DNA methylation and hydroxymethylation marks in Nile tilapia muscle 2018, Fernandes, Jorge Manuel de Oliveira; Konstantinidis, Ioannis; Podgorniak, Tomasz Krzysztof
Growth-associated circulating miRNAs in Nile tilapia Oreochromis niloticus 2018, Fernandes, Jorge Manuel de Oliveira; Wardale, Alex; Podgorniak, Tomasz Krzysztof; Babiak, Igor
Epigenetic and transcriptional effects of optimizing 1-C nutrients in plant based feeds for Atlantic salmon 2018, Skjærven, Kaja Helvik; Fernandes, Jorge Manuel de Oliveira; Dahl, John Arne; Hamre, Kristin; Jakt, Lars Martin
Macroalga-derived oligosaccharide can modify the intestinal mucus-associated bacteria of atlantic salmon 2018, Gupta, Shruti; Jep, Lokesh; Pierre, Ronan; Sørensen, Mette; Valente, Luisa M.P.; Fernandes, Jorge Manuel de Oliveira
Growth associated DNA methylation and hydroxymethylation profiles of the Nile tilapia (Oreochromis niloticus) pituitary uncover potential epigenetic markers 2018, Nord universitet: Ekvall, Hans Erland; Fernandes, Jorge Manuel de Oliveira
The mitochondrial epigenome of Nile tilapia(Oreochromis niloticus) 2018, Renström, Maria; Podgorniak, Tomasz Krzysztof; Whatmore, Paul; Piferrer, Francesc; Johansen, Steinar Daae; Skjærven, Kaja Helvik
2017
Nutrigenomic effects of plant protein-based aquafeeds on fish 2017, Dhanasiri, Anusha Krishanthi Shyama; Jony, Amritha; Fæste, Christiane Kruse; Bogevik, André Sture; Fernandes, Jorge Manuel de Oliveria
GROWTH OF JUVENILE DIPLOID AND TRIPLOID SALMON (Salmo salar) FED A STANDARD DIET AND AN EXPERIMENTAL DIET CONTAINING HIGH PROPORTIONS OF HYDROLISED PROTEINS. 2017, Puvanendran, Velmurugu; Peruzzi, Stefano; Falk-Petersen, Inger-Britt; Ulleberg, Lars-Olav; Tonning, fride; Hagen, Ørjan
The first hydroxymethylation map of fast muscle in Nile tilapia (Oreochromis niloticus) 2017, Konstantinidis, Ioannis; Fernandes, Jorge Manuel de Oliveria; Sætrom, Pål
Growth and the DNA methylation landscape in pituitary and fast muscle of Nile tilapia (Oreochromis niloticus) 2017, Podgorniak, Tomasz Krzysztof; Brockmann, Sven; Fernandes, Jorge Manuel de Oliveria
Growth of diploid and triploid Atlantic salmon (Salmo salar) fed a standard diet and an experimental diet containing high proportions of hydrolysed proteins. 2017, Peruzzi, Stefano; Puvanendran, Velmurugu; Hagen, Ørjan; Kwame Odei, D; Riesen, Guido; Ripman Seim, Rudi
Differences in gut transcriptome profiles between diploid and triploid Atlantic salmon (Salmo salar). 2017, Kwame Odei, D; Fernandes, Jorge; Hagen, Ørjan; Peruzzi, Stefano; Puvanendran, Velmurugu; Riesen, Guido
Hagen, Ø., Kwame Odei, D., Riesen, G., Ripman Seim, R., Fernandes, J.M.O. and Jobling M. (2017). Effects of triploidization on digestive enzyme activities and histology of Atlantic salmon (Salmo salar) fed two different diets. 2017, Godoy-Olmos, S; Martinez-Llorens, Silvia; Falk-Petersen, Inger-Britt; Ulleberg, Lars-Olav; Estruch-Cucarella, G; Tomás-Vidal, A
Dietary effects on gut transcriptome of diploid and triploid Atlantic salmon Salmo salar 2017, Odei, Derrick; Fernandes, Jorge Manuel de Oliveria; Hagen, Ørjan; Peruzzi, Stefano; Puvanendran, Velmurugu; Riesen, Guido
Growth of diploid and triploid Atlantic salmon Salmo salar fed phosphorous-rich diets with fish meal and hydrolyzed fish protein. 2017, Peruzzi, Stefano; Puvanendran, Velmurugu; Riesen, Guido; Ripman Seim, Rudi; Hagen, Øyvind; Martinez-Llorens, Silvia
A reduced representation of the DNA methylome in fast muscle of Nile tilapia Oreochromis niloticus 2017, Fernandes, Jorge Manuel de Oliveria; Podgorniak, Tomasz Krzysztof; Brockmann, Sven
The emerging field of epigenetics in aquaculture 2017, Fernandes, Jorge Manuel de Oliveria
2016
Expression changes of miRNAs involved in epigenetic regulation are associated with domestication in Nile tilapia (Oreochromis niloticus) 2016, Fernandes, Jorge Manuel de Oliveria; Podgorniak, Tomasz Krzysztof; El-Zaeem, Samy
Antimikrobielle peptid-gener i huden av Atlantisk laks infisert med salmonid alphavirus 2016, Kitani, Yoichiro; Patel, Sonal; Moore, Lindsey; Jarungsriapisit, Jiraporn; Ishizaki, Shoichiro; Nagashima, Yuji
EPIFISH: Innovative Epigenetic Markers for Fish Domestication 2016, Fernandes, Jorge Manuel de Oliveira
2015
Langtidseffekter av ulike startfôr 2015, Norsk Fiskeoppdrett: Volum E1 s. 42-43 Karlsen, Ørjan; Skjærven, Kaja Helvik; Fernandes, Jorge; van der Meeren, Terje; Rønnestad, Ivar; Hamre, Kristin
Insufficient Methionine and B-vitamin Levels in Zebrafish Feed Increases the Liver Lipid Accumulation and Affects Redox Regulation and One Carbon Metabolism in the Next Generation. 2015, Skjærven, Kaja Helvik; Fernandes, Jorge; Bock, Christoph; Hadler, Johanna; Aanes, Håvard; Lie, Kai Kristoffer
2013
L-amino acid oxidase - A self defense molecule of Atlantic cod 2013, Fish and Shellfish Immunology: Volum 34 s. 1658-1659 Kitani, Yoichiro; Fernandes, Jorge; Kiron, Viswanath
Regulation of the innate immune response by microRNAs in zebrafish 2013, Fish and Shellfish Immunology: Volum 34 s. 1706-1706 Fernandes, Jorge; Sundaram, Arvind; Kiron, V.; Jørgensen, Jorunn B
The gonadal miRNA transcriptome of Atlantic cod: Does sexual maturation alter the microRNA repertoire? 2013, Lazado, Carlo Cabacang; Nagasawa, Kazue; Babiak, Igor; Fernandes, Jorge; Gianetto, Alessia; Sundaram, Arvind
Is there a circadian rhythm in fast skeletal muscle of Atlantic cod? 2013, Lazado, Carlo Cabacang; Kumaratunga, Hiruni; Nagasawa, Kazue; Gianetto, Alessia; Babiak, Igor; Fernandes, Jorge
Photic sensitivity and circadian rhythmicity of the fast muscle transcriptome in Atlantic cod, Gadus morhua 2013, Lazado, Carlo Cabacang; Nagasawa, Kazue; Kollias, Spyros; Babiak, Igor; Fernandes, Jorge
Dynamics of the cod muscle transcriptome during a circadian cycle revealed by ion semiconductor-based sequencing 2013, Lazado, Carlo Cabacang; Nagasawa, Kazue; Babiak, Igor; Fernandes, Jorge
Photic plasticity of the diverse skeletal muscle myosin family of Atlantic cod 2013, Lazado, Carlo Cabacang; Nagasawa, Kazue; Babiak, Igor; Fernandes, Jorge
Exploring the transcriptional landscape of the circadian rhythm in the fast skeletal muscle of Atlantic cod using next-generation sequencing technologies 2013, Lazado, Carlo Cabacang; Nagasawa, Kazue; Kumaratunga, Hiruni; Babiak, Igor; Kollias, Spyros; Fernandes, Jorge
Atlantic cod (Gadus morhua) skin mucus proteins - Focus on lectins 2013, Fish and Shellfish Immunology: Volum 34 s. 1641-1641 Brinchmann, Monica Fengsrud; Rajan, Binoy; Fernandes, Jorge; Caipang, Christopher; Rombout, Jan H. W. M.; Kiron, Viswanath
2012
Marine genomics at the UiN 2012, Fernandes, Jorge
Development of a molecular toolbox of myogenic and growth-related genes in Senegalese sole 2012, Fernandes, Jorge; Campos, Catarina; Valente, Luisa M.P.
Does the Atlantic cod fast muscle have a functional circadian system? 2012, Lazado, Carlo Cabacang; Kumaratunga, Hiruni; Nagasawa, Kazue; Fernandes, Jorge
Unravelling the circadian cycling of the Atlantic cod (Gadus morhua) fast muscle transcriptome by next-generation sequencing 2012, Lazado, Carlo Cabacang; Nagasawa, Kazue; Fernandes, Jorge
Multiple toll-like receptor 22 paralogues in Atlantic cod 2012, Sundaram, Arvind; Viswanath, Kiron; Fernandes, Jorge
Bioinformatic characterization of gel-forming mucin genes expressed in the skin of Atlantic salmon, Salmo salar 2012, Micallef, Giulia; Martin, Samuel A.M.; Fernandes, Jorge; Tinsley, J; Bowman, Alan
Mukosale forsvarsmekanismer hos Atlantisk torsk 2012, Viswanath, Kiron; Fernandes, Jorge; Brinchmann, Monica F; Caipang, Christopher; Rombout, Jan H. W. M.; Schrøder, Merete Bjørgan
Gonadal microRNAome of Atlantic cod 2012, Lazado, Carlo Cabacang; Nagasawa, Kazue; Fernandes, Jorge
Natural peptide antibiotics from Atlantic cod 2012, Fernandes, Jorge; Ruangsri, Jareeporn; Brinchmann, Monica F; Caipang, Christopher; Noga, Ed; Viswanath, Kiron
454 pyrosequencing reveals changes in the fast muscle transcriptome during a sexual maturation cycle in Atlantic cod 2012, Nagasawa, Kazue; Sarropoulou, Elena; Lazado, Carlo Cabacang; Fernandes, Jorge
Impact of photoperiod and sexual maturation on growth performance of Atlantic cod – a genomic perspective 2012, Fernandes, Jorge; Nagasawa, Kazue; Lazado, Carlo Cabacang
Galektin-1: potensielt immunkompetent protein fra atlantisk torsk 2012, Brinchmann, Monica Fengsrud; Rajan, Binoy; Fernandes, Jorge; Caipang, Christopher; Viswanath, Kiron
Evidence of selection pressure within multiple toll-like receptor 22 paralogues in Atlantic cod 2012, Sundaram, Arvind; Viswanath, Kiron; Fernandes, Jorge
Thermally-induced phenotypic plasticity of myogenesis in a flatfish, Solea senegalensis 2012, Campos, Catarina; Fernandes, Jorge; Conceicao, Luis E.C.; Engrola, Sofia; Sousa, V; Rocha, E
Innate immune status of Senegalese sole (Solea senegalensis, Kaup 1858) fed increasing levels of plant protein sources 2012, Batista, Sonia; Cabral, Eduarda; Valente, Luisa M.P.; Fernandes, Jorge; Castro-Cunha, M.; Ozorio, Rodrigo
Rearing temperature affects Senegalese sole (Solea senegalensis) larvae protein metabolism and growth trajectories 2012, Campos, Catarina; Castanheira, M; Engrola, Sofia; Valente, Luisa M.P.; Fernandes, Jorge; Conceicao, Luis E.C.
GIA 2011: Genomics in Aquaculture 2011 Symposium 2012, Marine Biotechnology: Volum 14 s. 513-514 Sarropoulou, Elena; Fernandes, Jorge; Liu, Z. J.
2011
Novel application of nitrifying bacterial consortia to ease ammonia toxicity in ornamental fish transport units: Trials with zebrafish 2011, Dhanasiri, Anusha; Viswanath, Kiron; Fernandes, Jorge; Øivind, Bergh; Powell, Mark Darryn
Transcriptomic response to yeast-derived feed supplements in the skin of Atlantic salmon (Salmo salar L.) 2011, Micallef, Giulia; Bowman, Alan; Bickerdike, Ralph; Fernandes, Jorge; Martin, Samuel AM
Epigenetic regulation of development and growth in Senegalese sole (Solea senegalensis) 2011, Campos, Catarina; Conceicao, Luis; Valente, Luisa; Fernandes, Jorge
Antimicrobial peptides/proteins in immune immune-related tissues of Atlantic cod (Gadus morhua L.): expression and function from a health perspective 2011, Ruangsri, Jareeporn; Jeppinamogeru, Lokesh; Viswanath, Kiron; Fernandes, Jorge
Next-generation sequencing of testicular miRNAs in Atlantic cod 2011, Lazado, Carlo Cabacang; Nagasawa, Kazue; Fernandes, Jorge
MicroRNA expression changes in fast muscle of Atlantic cod during a maturation cycle 2011, Nagasawa, Kazue; Lazado, Carlo Cabacang; Fernandes, Jorge
Relative expression of myogenic regulatory factors in fast muscle of Atlantic cod and the influence of photoperiod manipulation in their expression plasticity 2011, Nagasawa, Kazue; Lazado, Carlo Cabacang; Fernandes, Jorge
Expression of cytokine genes in the intestine of Atlantic cod following dietary and pathogenic stimulation 2011, Jeppinamogeru, Lokesh; Fernandes, Jorge; Korsnes, Kjetil; Caipang, Christopher; Brinchmann, Monica F; Viswanath, Kiron
Nucleotide-enriched live feed for Atlantic cod Gadus morhua larvae: evaluation of genes related to muscle growth, nucleotide metabolism and stress 2011, Lanes, Carlos Fredrico Ceccon; Bolla, Sylvie; Fernandes, Jorge; Nicolaisen, Ove; Kiron, Viswanath; Babiak, Igor
Maternal transcriptome of Atlantic cod (Gadus morhua): comparison between farmed and wild broodstock 2011, Lanes, Carlos Fredrico Ceccon; Bizuayehu, Teshome; Fernandes, Jorge; Kiron, Viswanath; Babiak, Igor
Natural peptide antibiotics from Atlantic cod 2011, Fernandes, Jorge
SMALLRNAS IN ATLANTIC HALIBUT (Hippoglossus hippoglossus L.) 2011, Bizuayehu, Teshome; Lanes, Carlos Fredrico Ceccon; Furmanek, Tomasz; Karlsen, Bård Ove; Babiak, Joanna; Fernandes, Jorge
SEXUAL DIFFERENCES IN MIRNA EXPRESSION IN ATLANTIC HALIBUT BRAIN AND GONADS 2011, Bizuayehu, Teshome; Lanes, Carlos Fredrico Ceccon; Babiak, Joanna; Fernandes, Jorge; Johansen, Steinar Daae; Babiak, Igor
Influence of continuous light treatment on expression of health and stress biomarkers in Atlantic cod 2011, Giannetto, Alessia; Fasulo, Salvatore; Mauceri, Angela; Maisano, Maria; Domenico, Elena; Fernandes, Jorge
MicroRNA profiling of zebrafish embryos following antigenic stimulation 2011, Sundaram, Arvind; Viswanath, Kiron; Dopazo, Joaquin; Fernandes, Jorge
Transcriptional oscillation of peripheral circadian clocks during a maturation cycle in Atlantic cod 2011, Lazado, Carlo Cabacang; Nagasawa, Kazue; Fernandes, Jorge
Temperature-dependent expression of heat-shock proteins during Senegalese sole development 2011, Campos, Catarina; Valente, Luisa M.P.; Conceicao, Luis E.C.; Fernandes, Jorge
The skin transcriptome of Atlantic salmon (Salmo salar L.) generated by 454-sequencing 2011, Micallef, Giulia; Martin, S. A. M.; Bickerdike, Ralph; Fernandes, Jorge; Bowman, Alan
Gonadal development and expression profiles of miRNAs in Gadus morhua 2011, Giannetto, Alessia; Fernandes, Jorge; Mauceri, Angela; Fasulo, Salvatore
Proliferation and differention of myosatellite cells of Atlantic cod in vitro 2011, Lazado, Carlo Cabacang; Nagasawa, Kazue; Fernandes, Jorge
Differential miRNA expression during gonadal maturation in Atlantic cod 2011, Fernandes, Jorge; Giannetto, Alessia; Nagasawa, Kazue
Circadian periodicity of the molecular clock in Atlantic cod and its implications in precocious sexual maturation 2011, Lazado, Carlo Cabacang; Nagasawa, Kazue; Giannetto, Alessia; Fernandes, Jorge
Discovery of multiple piscidin paralogues in atlantic cod, Gadus morhua L 2011, Fernandes, Jorge; Ruangsri, Jareeporn; Caipang, Christopher; Viswanath, Kiron
Gonadal maturation and gene expression changes in sex steroid receptors and aromatase in Atlantic cod Gadus morhua L 2011, Nagasawa, Kazue; Presslauer, Christopher; Kirtiklis, Lech; Fernandes, Jorge; Babiak, Igor
Influence of photoperiod on gene expression of DNA methyltransferases, histone methyltransferases and myogenic factors in fast muscle of Atlantic cod, Gadus morhua 2011, Nagasawa, Kazue; Giannetto, Alessia; Lazado, Carlo Cabacang; Fernandes, Jorge
Thermal plasticity of miRNA expression during embryonic development of Senegalese sole 2011, Fernandes, Jorge; Campos, Catarina; Valente, Luisa; Conceicao, Luis
How light influences muscle growth in Atlantic cod 2011, Nagasawa, Kazue; Lazado, Carlo Cabacang; Fernandes, Jorge
Identification of molecular markers for egg quality in Atlantic halibut (Hippoglossus hippoglossus L.) 2011, Mommens, Maren; Bolla, Sylvie; Fernandes, Jorge; Tollefsen, Knut-Erik; Babiak, Igor
Thermal plasticity of growth and gene expression during Senegalese sole (Solea senegalensis) ontogeny 2011, Campos, Catarina; Valente, Luisa M.P.; Conceicao, Luis E.C.; Fernandes, Jorge
Chronic unpredictable stress and HPI axis gene expression in European sea bass (Dicentrarchus labrax) 2011, Kollias, Spyros; Fernandes, Jorge; Papandroulakis, N.; Pavlidis, M.
Piscidin: a natural antibiotic isolated from Atlantic cod, Gadus morhua 2011, Ruangsri, Jareeporn; Juntarut, Pongsaton; Brinchmann, Monica; Caipang, Christopher; Viswanath, Kiron; Fernandes, Jorge
Genome-wide screen of molecular markers of Comprehensive molecular study of muscle growth and sexual maturation in Atlantic cod, Gadus morhua 2011, Nagasawa, Kazue; Lazado, Carlo; Fernandes, Jorge
2010
MicroRNA profiling using Solid 3 platform during early development of Atlantic halibut (Hippoglossus hippoglossus) 2010, Johansen, Steinar D.; Bizuayehu, Teshome; Lanes, Carlos Frederico Ceccon; Furmanek, Tomasz; Karlsen, Bård O.; Fernandes, Jorge
Piscidin: a key innate defense peptide of Atlantic cod (Gadus morhua) 2010, Ruangsri, Jareeporn; Juntarut, Pongsaton; Brinchmann, Monica Fengsrud; Kiron, Viswanath; Fernandes, Jorge
The DNMT and MLL gene families from Atlantic cod (Gadus morhua) and their regulation by photoperiod 2010, Fernandes, Jorge; Nagasawa, Kazue; Giannetto, Alessia
Diversity of antimicrobial peptides in teleosts 2010, Fernandes, Jorge
Synergistic activity of an antibacterial peptide from Atlantic cod (Gadus morhua L.) with other antibacterial agents 2010, Juntarut, Pongsaton; Ruangsri, Jareeporn; Brinchmann, Monica Fengsrud; Kiron, Viswanath; Fernandes, Jorge
Piscidin and the mucosal innate immune system of Atlantic cod (Gadus morhua) 2010, Fernandes, Jorge; Brinchmann, Monica Fengsrud; Kiron, Viswanath; Caipang, Christopher Marlowe; Ruangsri, Jareeporn
DNA and histone methyltransferases in Atlantic cod (Gadus morhua) and their photic-related expression changes 2010, Fernandes, Jorge; Giannetto, Alessia; Nagasawa, Kazue
Characterization and molecular evolution of a piscidin gene from Atlantic cod (Gadus morhua L.) 2010, Juntarut, Pongsaton; Brinchmann, Monica Fengsrud; Kiron, Viswanath; Fernandes, Jorge; Ruangsri, Jareeporn
Incubation temperature affects methyltransferases expression during ontogeny of Senegalese sole (Solea senegalensis) 2010, Campos, Catarina; Conceicao, Luis; Valente, Luisa; Fernandes, Jorge
Photoperiodic treatment promotes weight gain and influences gene expression of histone methyl transferases in Atlantic cod (Gadus morhua) 2010, Nagasawa, Kazue; Giannetto, Alessia; Kirtiklis, Lech; Lazado, Carlo C.; Fernandes, Jorge
What determines growth potential and quality of farmed european fish species? a review 2010, Valente, Luisa; Moutou, Katerina; Conceicao, Luis; Galloway, Trina; Fernandes, Jorge; Johnston, Ian A.
Molecular evolution of zebrafish dnmt3 genes and differential expression in relation to embryonic temperature 2010, Fernandes, Jorge; Campos, Catarina; Valente, Luisa
Myogenic satellite cells of Atlantic cod: development of an in vitro model to study muscle growth 2010, Lazado, Carlo C.; Nagasawa, Kazue; Fernandes, Jorge
Changes in expression of steroid receptors and aromatase in Atlantic cod during a maturation cycle 2010, Presslauer, Christopher; Nagasawa, Kazue; Kirtiklis, Lech; Fernandes, Jorge; Babiak, Igor
miRNA and sexual maturation in Atlantic cod females 2010, Giannetto, Alessia; Fasulo, Salvatore; Mauceri, Angela; Fernandes, Jorge
Thermal plasticity of methyltransferases? expression during ontogeny of Senegalese sole 2010, Campos, Catarina; Conceicao, Luis; Valente, Luisa; Fernandes, Jorge
The Mll genes in Atlantic cod (Gadus morhua) and their expression during photoperiod manipulation 2010, Nagasawa, Kazue; Giannetto, Alessia; Kirtiklis, Lech; Fernandes, Jorge
Selection pressure in fish-specific Toll-like receptors 2010, Sundaram, Arvind; Fernandes, Jorge
Development of a chronic mild stress (CMS) model in fish for the study of the neuroendocrine mechanisms of stress in European seabass (Dicentrarchus labrax) 2010, Kollias, Spyros; Fernandes, Jorge; Papandroulakis, N.; Pavlidis, M.
Evolution of a multifunctional gene and its involvement in immune response: The warm temperature acclimation protein Wap65 in the European seabass Dicentrarchus labrax 2010, Sarropoulou, Elena; Fernandes, Jorge; Mitter, Karin; Magoulas, Antonios; Mulero, Victoriano; Sepulcre, Maria
Growth and stress tolerance of Atlantic cod (Gadus morhua) larvae reared on rotifers and artemia enriched with nucleotide products 2010, Lanes, Carlos Frederico Ceccon; Bolla, Sylvie; Kiron, Viswanath; Nicolaisen, Ove; Fernandes, Jorge; Babiak, Igor
Biochemical composition and quality of Atlantic cod (Gadus morhua) eggs: comparison between farmed and wild broodstock 2010, Lanes, Carlos Frederico Ceccon; Bizuayehu, Teshome; Fernandes, Jorge; Kiron, Viswanath; Babiak, Igor
2009
Genomic screen for novel genes regulating growth in teleosts 2009, Fernandes, Jorge; Solberg, Christel; Johnston, Ian A.
Zebrafish TLR network response to different bacterial infections - a bioinformatic analysis 2009, Sundaram, Arvind; Fernandes, Jorge
Development of a halibut (Hippoglossus hippoglossus) oligonucleotide microarray 2009, Tollefsen, Knut-Erik; Mommens, Maren; Babiak, Igor; Fernandes, Jorge
A genomic screen to identify genes that control muscle growth in Atlantic salmon (Salmo salar) 2009, Fernandes, Jorge; Solberg, Christel; Johnston, Ian A.
Development of a halibut (Hippoglossus hippoglossus) oligonucleotide microarray Genomics in Aquaculture. International symposium. 5-7 July, 2009 2009, Nord universitet: Tollefsen, Knut-Erik; Mommens, Maren; Babiak, Igor; Fernandes, Jorge
A piscidin orthologue from basal acanthomorph fish: potential role in innate immunity of Atlantic cod (Gadus morhua) 2009, Caipang, Christopher Marlowe; Ruangsri, Jareeporn; Kiron, Viswanath; Fernandes, Jorge
Epigenetic regulation of growth by dietary lipids in Senegalese sole (Solea Senegalensis) 2009, Fernandes, Jorge; Campos, Catarina; Valente, Luisa
A piscidin orthologues from basal acanthomorph fish: potential role in innate immunity of Atlantic cod (Gadus morhua) 2009, Caipang, Christopher Marlowe; Ruangsri, Jareeporn; Kiron, Viswanath; Fernandes, Jorge
Influence of dietary lipids on growth and expression of key myogenic genes in Senegalese sole 2009, Campos, Catarina; Valente, Luisa; Fernandes, Jorge
Potent antimicrobial activity in various tissues of Atlantic cod (Gadus morhua L.) 2009, Fernandes, Jorge; Brinchmann, Monica Fengsrud; Kiron, Viswanath; Ruangsri, Jareeporn
Molecular evolution of the piscidin gene from teleosts through positive selection 2009, Fernandes, Jorge; Kiron, Viswanath; Ruangsri, Jareeporn
Expression of genes involved in Atlantic halibut (Hippoglossus hippoglossus) metabolism, a fasting and refeeding study 2009, Hagen, Ørjan; Fernandes, Jorge; Solberg, Christel; Johnston, Ian A.
Maternal EST library: a screening for molecular markers for egg quality in Atlantic halibut (Hippoglossus hippoglossus L.) 2009, Mommens, Maren; Fernandes, Jorge; Bizuayehu, Teshome; Johnston, Ian A.; Babiak, Igor
Evolutionary and genomic analyses of cee, a novel but ancient gene involved in development 2009, Fernandes, Jorge; MacQueen, Daniel; Lee, Hung-Tai; Johnston, Ian A.
Dietary lipid levels have a remarkable impact on the expression of growth-related genes in Senegalese sole (Solea senegalensis Kaup) 2009, Campos, Catarina; Valente, Luisa; Borges, Pedro; Bizuayehu, Teshome; Fernandes, Jorge
Cloning, characterization and expression study of an antimicrobial peptide, piscidin, from Atlantic cod (Gadus morhua) 2009, Kiron, Viswanath; Caipang, Christopher Marlowe; Fernandes, Jorge; Ruangsri, Jareeporn
2008
Cee, a novel but ancient gene under strict purifying selection 2008, Fernandes, Jorge; MacQueen, Daniel; Lee, Hung-Tai; Johnston, Ian A.
Selection of suitable reference genes for real-time PCR studies of Atlantic halibut development 2008, Fernandes, Jorge; Mommens, Maren; Hagen, Ørjan; Babiak, Igor; Solberg, Christel
Potential reference genes for real-time PCR studies during early Atlantic halibut (Hippoglossus hippoglossus) development 2008, Mommens, Maren; Fernandes, Jorge; Hagen, Ørjan; Babiak, Igor; Solberg, Christel
Using genomics to identify novel genes associated with muscle growth in Atlantic salmon 2008, Fernandes, Jorge; Johnston, Ian A.
Identification of underlying mechanisms controlling cathepsin activity associated to flesh quality deterioration in Atlantic halibut, H. Hippoglossus L 2008, Hagen, Ørjan; Fernandes, Jorge; Solberg, Christel; Johnston, Ian A.
2007
Discovering novel genes that regulate muscle growth in Atlantic salmon 2007, Fernandes, Jorge; Solberg, Christel; Johnston, Ian A.