Subject description for 2024/25
Aquatic Genomics and Bioinformatics
BI311F
Subject description for 2024/25
Aquatic Genomics and Bioinformatics
BI311F
Topics covered in this course: Fundamentals aspects of bioinformatics, basic DNA sequence analysis, multiple sequence alignments, BLAST, genome annotation, construction of phylogenetic trees, synteny analysis, and analysis of high-throughput gene expression data.
Students enrolled on the MSc programme in Biosciences.
On successful completion of the course:
Knowledge
The student should:
- Have an overview of the main aspects of comparative and functional genomics
- Master essential bioinformatics concepts be familiar with the appropriate bioinformatics tools
- Have knowledge of the relevant aspects in molecular biology and biochemistry
- Understand how genomics can be applied to address important issues in aquaculture and ecology
- Know the principles underlying analysis of large-scale functional genomics data
Skills
The student should:
- Have broad computational skills and be able to use various bioinformatics applications
- Know how to analyse large DNA sequence data sets
- Be able to predict and characterize eukaryotic genes
- Have the expertise to interpret high-throughput functional genomics data
- Know how to retrieve data from electronic biological databases
- Be able to access and understand scientific literature pertaining to the field
General competence
The student should:
- Understand and apply genomics and bioinformatics concepts to cutting-edge aquaculture research
- Be able to discuss and present scientific papers in genomics and bioinformatics
- Have the competence to participate in bioinformatics and genomics research projects
No tution fees. Semester registration and course literature.
Elective:
- MSc in Biosciences
- Nordic Master in Sustainable Production and Utilization of Marine Bioresources
Specialization:
- MSc in Biosciences - Genomics
Block teaching. Lectures, tutorials and computer labs.
Evaluation using mid-term and final surveys. Students are also encouraged to participate in the central quality surveys.
Compound assessment, grading scale Letter grades
- Oral presentation, comprises 40/100 of the grade, grading scale Letter grades.
- Written assessment, comprises 60/100 of the grade, grading scale Letter grades.
Basic computational skills and some knowledge of molecular biology and biochemistry are advantageous for successful completion of this course.