Ioannis Konstantinidis
Postdoctoral Fellow
Faculty of Biosciences and Aquaculture
Areas of expertise
Biology
I am a research-oriented postdoctoral fellow with strong passion in biology and bioinformatics. My goal is to decipher and understand fundamental and complex biological systems that ultimately lead to high technology readiness. If you have any questions or interested in any of the ongoing projects, feel free to contact me at ioannis.konstantinidis@nord.no
BSc (6) and MSc (2) student supervisions throughout my MSc and PhD studies.
Teaching ;Aquatic Genomics and Bioinformatics MSc course (BI311F) ;at Nord University since 2021.
Working towards the validation of epigenetic markers related to animal domestication and their growth potential, using CRISPR.
Optimizing nuclei isolations for ;single-nuclei ATAC and RNA-Seq libraries using the 10X Genomics and Parse technologies.
Principal investigator of funded project EPITRANS (by Nord R&;D division 2022-2023).
Co-principal investigator of ;funded project EPICOD (by NFR 2023-2028)
You can find my research output here .
2023
Genome-wide hydroxymethylation profiles in liver of female Nile tilapia with distinct growth performance 2023, Scientific Data: Volum 10 s. 1-8;Konstantinidis, Ioannis; Sætrom, Pål; Fernandes, Jorge Manuel de Oliveira
DNA hydroxymethylation differences underlie phenotypic divergence of somatic growth in Nile tilapia reared in common garden 2023, Epigenetics: Volum 18;Konstantinidis, Ioannis; Sætrom, Pål; Brieuc, Marine Servane Ono; Jakobsen, Kjetill Sigurd; Liedtke, Hannes; Pohlmann, Caroline
2022
Biogeography pattern of the marine angiosperm Cymodocea nodosa in the eastern Mediterranean Sea related to the quaternary climatic changes 2022, Ecology and Evolution: Volum 12;Konstantinidis, Ioannis; Gkafas, Georgios A.; Papathanasiou, Vasillis; Orfanidis, Sotiris; Küpper, Frithjof C.; Arnaud-Haond, Sophie
Brewer’s Spent Dry Yeast Modulates Immunity in Gilthead Sea Bream (Sparus aurata) 2022, Frontiers in Marine Science: Volum 9;Konstantinidis, Ioannis; Firmino, Joana P.; Ruiz, Alberto; Iñarra, Bruno; Martin, David San; Estevez, Alicia
2021
Epigenetic mapping of the somatotropic axis in Nile tilapia reveals differential DNA hydroxymethylation marks associated with growth 2021, Genomics: Volum 113 s. 2953-2964;Konstantinidis, Ioannis; Anastasiadi, Dafni; Sætrom, Pål; Nedoluzhko, Artem; Mjelle, Robin; Podgorniak, Tomasz
2020
CircParser: a novel streamlined pipeline for circular RNA structure and host gene prediction in non-model organisms 2020, PeerJ: Volum 8;Nedoluzhko, Artem; Sharko, Fedor S.; Rbbani, Md Golam; Teslyuk, Anton; Konstantinidis, Ioannis; Fernandes, Jorge Manuel de Oliveira
Major gene expression changes and epigenetic remodelling in Nile tilapia muscle after just one generation of domestication 2020, Epigenetics: Volum 15 s. 1052-1067;Konstantinidis, Ioannis; Sætrom, Pål; Mjelle, Robin; Nedoluzhko, Artem; Robledo, Diego; Fernandes, Jorge Manuel de Oliveira
2019
Differences in the fast muscle methylome provide insight into sex-specific epigenetic regulation of growth in Nile tilapia during early stages of domestication 2019, Epigenetics: Volum 14 s. 818-836;Podgorniak, Tomasz Krzysztof; Brockmann, Sven; Konstantinidis, Ioannis; Fernandes, Jorge Manuel de Oliveira
2023
Comparative transcriptome analysis reveals a serotype-specific immune response in Nile tilapia (Oreochromis niloticus) infected with Streptococcus agalactiae 2023,;Appel, Renan; Konstantinidis, Ioannis; Pretto-Giordano, Lucienne; Vilas-Boas, Laurival; Fernandes, Jorge Manuel de Oliveira
2022
TARGETING MYOGENESIS MODULATION VIA CRISPR/CAS9-MEDIATION IN FARMED NILE TILAPIA 2022, Aquaculture Journal: Volum 2 s. 145;Galindo-Villegas, Jorge; Konstantinidis, Ioannis; Fernandes, Jorge Manuel de Oliveira
2021
Differences in the circular RNA transcriptome between wild and captive-bred Nile tilapia 2021,;Rbbani, Md Golam; Nedoluzhko, Artem; Sharko, Fedor; Konstantinidis, Ioannis; Fernandes, Jorge Manuel de Oliveira
Circular RNA host gene prediction in Nile tilapia using the novel circParser pipeline 2021,;Nedoluzhko, Artem; Sharko, Fedor; Rbbani, Md Golam; Teslyuk, Anton; Konstantinidis, Ioannis; Fernandes, Jorge Manuel de Oliveira
Exploring epigenetic resistance to infectious salmon anaemia in Atlantic salmon by genome-wide bisulfite sequencing in heart tissue 2021,;Ekvall, Hans Erland; Fernandes, Jorge Manuel de Oliveira; Konstantinidis, Ioannis; Andersen, Øivind; Tetens, Jens
Differences in liver DNA hydroxymethylation reflect the growth phenotype 2021,;Konstantinidis, Ioannis; Sætrom, Pål; Liedtke, Hannes; Pohlmann, Caroline; Tsoulia, Thomais; Fernandes, Jorge Manuel de Oliveira
DNA hydroxymethylation is linked to higher growth rate in Nile tilapia 2021,;Konstantinidis, Ioannis; Sætrom, Pål; Brieuc, Marine Servane Ono; Jakobsen, Kjetill Sigurd; Liedtke, Hannes; Pohlmann, Caroline
2020
DNA hydroxymethylation and improved growth of Nile tilapia (Oreochromis niloticus) during domestication 2020, Nord universitet:;Fernandes, Jorge Manuel de Oliveira; Konstantinidis, Ioannis
Circular RNA host gene and orthologue prediction using
the self-designed CircParser pipeline 2020,;Nedoluzhko, Artem; Sharko, Fedor S.; Rabbani, Md Golam; Teslyuk, Anton; Konstantinidis, Ioannis; Fernandes, Jorge Manuel de Oliveira
Hydroxymethylation changes during early embryonic
development in zebrafish 2020,;Nedoluzhko, Artem; Dandara Da Silva Berrutti, Paula; Guimarães, Igo Gomes; Konstantinidis, Ioannis; Babiak, Igor; Fernandes, Jorge Manuel de Oliveira
2019
Muscle transcriptome changes within one generation of Nile tilapia domestication 2019,;Fernandes, Jorge Manuel de Oliveira; Konstantinidis, Ioannis; Nedoluzhko, Artem; Mjelle, Robin
Tissue-specific hydroxymethylome profiles of Nile tilapia Oreochromis niloticus at single nucleotide resolution 2019,;Konstantinidis, Ioannis; Sætrom, Pål; Fernandes, Jorge Manuel de Oliveira
Differences in liver hydroxymethylomes of Nile tilapia with distinct growth rates 2019,;Fernandes, Jorge Manuel de Oliveira; Konstantinidis, Ioannis; Pohlmann, Caroline; Tsoulia, Thomais; Liedtke, Hannes
2018
Growth-associated DNA methylation and hydroxymethylation marks in Nile tilapia muscle 2018,;Fernandes, Jorge Manuel de Oliveira; Konstantinidis, Ioannis; Podgorniak, Tomasz Krzysztof
DNA hydroxy- and methylation profiles of the Nile tilapia pituitary link hypermethylation and hyperhydroxymethylation to faster growth 2018,;Ekvall, Hans; Konstantinidis, Ioannis; Podgorniak, Tomasz Krzysztof; Fernandes, Jorge Manuel de Oliveira
Fast muscle hydroxymethylation patterns in wild and captive Nile tilapia (Oreochromis niloticus) provide insights into fish domestication 2018,;Konstantinidis, Ioannis; Sætrom, Pål; Fernandes, Jorge Manuel de Oliveira
2017
The first hydroxymethylation map of fast muscle in Nile tilapia (Oreochromis niloticus) 2017,;Konstantinidis, Ioannis; Fernandes, Jorge Manuel de Oliveria; Sætrom, Pål